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BioLiP
>protein
SEEEEKRRVRRERNKLAAAKCRNRRRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAH

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vpe:A 67 67 1.0000 1.0000 1.0000 1.16e-38 5vpe:C, 5vpf:A, 5vpf:C
2 2wt7:A 63 63 0.7463 0.7937 0.7937 6.44e-30 1a02:F, 1fos:E, 1fos:G, 1s9k:D
3 5vpe:D 67 58 0.2836 0.2836 0.3276 0.002 5vpe:B, 5vpf:B, 5vpf:D
4 1t2k:D 61 61 0.2985 0.3279 0.3279 0.015
5 7x5e:B 106 43 0.2687 0.1698 0.4186 0.040 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
6 2dq0:A 447 52 0.2985 0.0447 0.3846 0.063 2dq0:B, 2zr2:A, 2zr2:B
7 5t01:A 62 39 0.2239 0.2419 0.3846 0.57 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
8 7elt:A 330 50 0.2239 0.0455 0.3000 2.0 7ens:A, 7ent:A, 7ev2:A, 7ev3:A
9 7q1s:E 30 26 0.1940 0.4333 0.5000 2.1 7q1s:M, 7q1s:A
10 1skn:P 74 23 0.1642 0.1486 0.4783 2.4
11 8w7g:A 390 65 0.3134 0.0538 0.3231 4.8
12 7x5e:E 101 57 0.2687 0.1782 0.3158 5.3 3a5t:A, 3a5t:B, 7x5e:A, 7x5f:A, 7x5f:E, 7x5g:A, 7x5g:E
13 8k8c:A 60 53 0.2388 0.2667 0.3019 6.1 8k8c:B, 1nwq:A, 1nwq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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