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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SEEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFS
MCEHHLVPFVGKVHIGYLPVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMN
SKTVTSTMLGVFREDPKTREEFLTLIRS

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1fb1:A 196 191 1.0000 0.9592 0.9843 3.11e-139 7ala:A, 7ala:E, 7ala:B, 7ala:C, 7ala:D, 7alb:A, 7alb:E, 7alb:B, 7alb:C, 7alb:D, 7alb:F, 7alb:J, 7alb:G, 7alb:H, 7alb:I, 7alb:K, 7alb:O, 7alb:L, 7alb:M, 7alb:N, 7alb:P, 7alb:T, 7alb:Q, 7alb:R, 7alb:S, 7alc:A, 7alc:D, 7alq:A, 7alq:E, 7alq:B, 7alq:C, 7alq:D, 7alq:F, 7alq:J, 7alq:G, 7alq:H, 7alq:I, 7alq:K, 7alq:O, 7alq:L, 7alq:M, 7alq:N, 7alq:P, 7alq:T, 7alq:Q, 7alq:R, 7alq:S, 1fb1:B, 1fb1:C, 1fb1:D, 1fb1:E, 1is8:A, 1is8:B, 1is8:C, 1is8:D, 1is8:E, 1is8:F, 1is8:G, 1is8:H, 1is8:I, 1is8:J, 1wpl:A, 1wpl:E, 1wpl:B, 1wpl:C, 1wpl:D, 1wpl:F, 1wpl:J, 1wpl:G, 1wpl:H, 1wpl:I, 6z80:A, 6z80:B, 6z80:C, 6z80:E, 6z80:G, 6z80:H, 6z80:I, 6z80:J, 6z80:F, 6z80:D, 6z86:A, 6z86:Q, 6z86:B, 6z86:D, 6z86:C, 6z86:T, 6z86:E, 6z86:J, 6z86:F, 6z86:M, 6z86:G, 6z86:K, 6z86:N, 6z86:H, 6z86:I, 6z86:L, 6z86:O, 6z86:P, 6z86:S, 6z86:R, 6z87:A, 6z87:B, 6z87:C, 6z87:D, 6z87:E, 6z88:A, 6z88:E, 6z88:B, 6z89:A, 6z89:B, 6z89:C, 6z89:D
2 7alc:E 171 190 0.8830 0.9708 0.8737 3.17e-115 7alc:B, 7alc:C, 6z85:A, 6z85:E, 6z85:C, 6z85:B, 6z85:D, 6z85:G, 6z85:F, 6z85:H, 6z85:I, 6z85:J, 6z88:C, 6z88:F, 6z88:I, 6z88:D, 6z88:H, 6z88:J, 6z88:G, 6z89:E
3 1wm9:A 185 185 0.5745 0.5838 0.5838 7.32e-71 1wm9:B, 1wm9:C, 1wm9:D, 1wm9:E, 1wuq:A, 1wuq:B, 1wuq:E, 1wuq:C, 1wuq:D, 1wur:A, 1wur:B, 1wur:E, 1wur:C, 1wur:D
4 1a8r:A 221 197 0.3830 0.3258 0.3655 2.54e-29 1a8r:B, 1a8r:C, 1a8r:D, 1a8r:E, 1a8r:F, 1a8r:G, 1a8r:H, 1a8r:I, 1a8r:J, 1a8r:K, 1a8r:L, 1a8r:M, 1a8r:N, 1a8r:O, 1a9c:A, 1a9c:B, 1a9c:C, 1a9c:D, 1a9c:E, 1a9c:F, 1a9c:G, 1a9c:H, 1a9c:I, 1a9c:J, 1a9c:K, 1a9c:L, 1a9c:M, 1a9c:N, 1a9c:O, 1fbx:A, 1fbx:B, 1fbx:C, 1fbx:D, 1fbx:E, 1fbx:F, 1fbx:G, 1fbx:H, 1fbx:I, 1fbx:J, 1fbx:K, 1fbx:L, 1fbx:M, 1fbx:N, 1fbx:O, 1n3r:A, 1n3r:E, 1n3r:B, 1n3r:C, 1n3r:D, 1n3r:F, 1n3r:J, 1n3r:G, 1n3r:H, 1n3r:I, 1n3r:K, 1n3r:O, 1n3r:L, 1n3r:M, 1n3r:N, 1n3s:A, 1n3s:E, 1n3s:B, 1n3s:C, 1n3s:D, 1n3s:F, 1n3s:J, 1n3s:G, 1n3s:H, 1n3s:I, 1n3t:F, 1n3t:J, 1n3t:G, 1n3t:H, 1n3t:I, 1n3t:K, 1n3t:O, 1n3t:L, 1n3t:M, 1n3t:N, 1n3t:A, 1n3t:E, 1n3t:B, 1n3t:C, 1n3t:D
5 4du6:A 219 123 0.2926 0.2511 0.4472 6.77e-29 4du6:B, 4du6:C, 4du6:D, 4du6:E
6 7ezx:X1 324 67 0.1117 0.0648 0.3134 2.7 7ezx:X7, 7ezx:X9, 7ezx:XF, 7ezx:XI, 7ezx:XK, 6kgx:X2, 6kgx:X6, 6kgx:X7, 6kgx:XB, 6kgx:XF, 6kgx:XI, 7y4l:XB, 7y4l:XC, 7y4l:XD, 7y4l:XE, 7y4l:X2, 7y4l:X6, 7y5e:XE, 7y5e:XG, 7y5e:XH, 7y5e:XO, 7y5e:X1, 7y5e:X4, 7y7a:X1, 7y7a:X4, 7y7a:X8, 7y7a:XI, 7y7a:XK, 7y7a:XP, 7y7a:XR, 7y7a:XS, 7y7a:Xe, 7y7a:Xj, 7y7a:Xl, 7y7a:Xn
7 1vl8:B 252 65 0.0957 0.0714 0.2769 6.9 1vl8:A
8 8hmc:B 1195 34 0.0585 0.0092 0.3235 7.2 8hmd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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