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BioLiP
>protein
SEEDEEHTIITDTELPPLKLMHSFCAFKADDGPCKAIMKRFFFNIFTRQCEEFIYGGCEGNQNRFESLEECKKMCTRD

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bqd:A 78 78 1.0000 1.0000 1.0000 2.56e-54 4bqd:B
2 2knt:A 58 53 0.2564 0.3448 0.3774 5.34e-11 1knt:A
3 4bnr:J 58 52 0.2821 0.3793 0.4231 1.14e-10 1bhc:J, 4bnr:I, 1bpi:A, 1bz5:A, 2fi3:I, 2fi4:I, 2fi5:I, 3fp7:J, 2ftl:I, 2ftm:B, 3ldj:B, 3ldj:C, 6pti:A, 1qlq:A
4 5jbt:Y 38 38 0.2308 0.4737 0.4737 1.03e-07
5 5nx1:D 42 40 0.2051 0.3810 0.4000 2.72e-07 5nx3:D
6 6yw5:11 88 29 0.1538 0.1364 0.4138 0.36 6ywe:11, 6ywx:11, 6ywy:11
7 8fvz:A 433 37 0.1667 0.0300 0.3514 4.8 8fvz:B, 7sp5:A, 7sp5:B
8 3uyt:D 268 34 0.1410 0.0410 0.3235 5.3 4kb8:A, 4kba:A
9 1ckj:A 296 34 0.1410 0.0372 0.3235 5.8 1ckj:B, 8d7m:A, 8d7m:B, 8d7n:B, 8d7n:A, 8d7o:A, 8d7o:B, 8d7p:B, 8d7p:A, 6f1w:A, 6f1w:B, 6f26:A, 6f26:B, 6gzm:A, 6gzm:B, 4hgt:A, 4hgt:B, 6hmp:A, 6hmp:B, 6hmr:A, 6hmr:B, 4hnf:A, 4hnf:B, 4hni:A, 4hni:B, 5ih4:A, 5ih5:A, 5ih6:A, 8izc:A, 8izc:B, 4kb8:B, 4kb8:C, 4kb8:D, 4kba:B, 4kba:C, 4kba:D, 4kbc:A, 4kbc:B, 4kbk:A, 4kbk:B, 4kbk:C, 4kbk:D, 5mqv:A, 5mqv:B, 5mqv:C, 5mqv:D, 5mqv:E, 5mqv:F, 7nzy:A, 7nzy:B, 7nzy:C, 7nzy:D, 5okt:A, 5okt:B, 5okt:C, 5okt:D, 7p7f:A, 7p7f:B, 7p7f:C, 7p7f:D, 7p7g:A, 7p7g:B, 7p7h:A, 7p7h:B, 7qr9:A, 7qr9:B, 7qr9:C, 7qr9:D, 7qra:A, 7qra:B, 7qra:C, 7qra:D, 7qrb:A, 7qrb:B, 7qrb:C, 7qrb:D, 6rcg:A, 6rch:A, 6ru6:A, 6ru6:B, 6ru7:A, 6ru7:B, 6ru8:A, 6ru8:B, 6ru8:C, 6ru8:D, 4tn6:A, 4tw9:A, 4tw9:B, 4twc:A, 4twc:B, 3uyt:A, 3uyt:B, 3uyt:C, 3uzp:A, 3uzp:B, 8vxd:A, 8vxd:B, 8vxf:A, 8vxf:B, 5w4w:A, 5w4w:B, 5w4w:C, 5w4w:D, 5x17:A, 5x17:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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