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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SEEAFIYEAIRTPRGKQKNGSLHEVKPLSLVVGLIDELRKRHPDLDENLISDVILGCVSPVGDQGGDIARAAVLASGMPV
TSGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAMGLDPATNYDVMFVPQSIGADLIATIEG
FSREDVDAYALRSQQKAAEAWSGGYFAKSVVPVRDQNGLLILDHDEHMRPDTTKEGLAKLKPAFEGLAALGGFDDVALQK
YHWVEKINHVHTGGNSSGIVDGAALVMIGSAAAGKLQGLTPRARIVATATSGADPVIMLTGPTPATRKVLDRAGLTVDDI
DLFELNEAFASVVLKFQKDLNIPDEKLNVNGGAIAMGHPLGATGAMILGTMVDELERRNARRALITLCIGGGMGVATIIE
RV

The query sequence (length=402) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7o4t:D 403 402 1.0000 0.9975 1.0000 0.0 4b3i:C, 4b3j:C, 4b3j:D, 7o1i:D, 7o1l:D, 7o4r:C, 7o4r:D, 7o4s:C, 7o4s:D, 7o4t:C, 8opu:C, 8opu:D, 8opx:C, 8opx:D, 8opy:D, 8oql:C, 8oql:D, 8oqm:D, 8oqo:C, 8oqo:D, 8oqp:C, 8oqp:D, 8oqs:C, 8oqs:D, 8pf8:C, 8pf8:D
2 2d3t:C 390 402 0.4055 0.4179 0.4055 7.45e-87 2d3t:D, 1wdk:C, 1wdk:D, 1wdl:C, 1wdl:D, 1wdm:C, 1wdm:D
3 6pcb:A 403 423 0.4403 0.4392 0.4184 4.57e-83 6pcb:B, 6pcb:C, 6pcb:D, 6pcc:A, 6pcc:B, 6pcc:C, 6pcc:D, 6pcd:A, 6pcd:B, 6pcd:D
4 4xl4:A 392 414 0.4080 0.4184 0.3961 2.85e-78 4xl4:B
5 4ubt:A 396 411 0.3955 0.4015 0.3869 1.75e-77 4ubt:B, 4ubt:C, 4ubt:D, 4ubu:A, 4ubu:B, 4ubu:C, 4ubu:D, 4ubu:E, 4ubu:F, 4ubu:G, 4ubu:H, 4ubv:A, 4ubv:B
6 8gqm:A 377 394 0.3831 0.4085 0.3909 8.76e-74
7 1ou6:A 392 366 0.3632 0.3724 0.3989 3.05e-73 1dlv:A, 1dlv:B, 1dlv:C, 1dlv:D, 1dm3:A, 1dm3:B, 1dm3:C, 1dm3:D, 7lbz:A, 7lbz:B, 7lbz:C, 7lbz:D, 7lca:A, 7lca:B, 7lca:C, 7lca:D, 7lcl:A, 7lcl:B, 7lcl:C, 7lcl:D, 7ld2:A, 7ld2:B, 7ld2:C, 7ld2:D, 7ldc:A, 7ldc:B, 7ldc:C, 7ldc:D, 7ldt:A, 7ldt:B, 7ldt:C, 7ldt:D, 7ldu:A, 7ldu:B, 7ldu:C, 7ldu:D, 7ldv:A, 7ldv:B, 7ldv:C, 7ldv:D, 7ldw:A, 7ldw:B, 7ldw:C, 7ldw:D, 1m1o:A, 1m1o:B, 1m3z:A, 1m3z:B, 1m3z:C, 1m3z:D, 1nl7:A, 1nl7:B, 1ou6:B, 1qfl:A, 1qfl:B, 1qfl:C, 1qfl:D, 2vtz:A, 2vtz:B, 2vtz:C, 2vtz:D, 2vu0:A, 2vu0:B, 2vu1:A, 2vu1:B, 2vu2:A, 2vu2:B, 2wkt:A, 2wkt:B, 2wkt:C, 2wkt:D, 2wku:A, 2wku:B, 2wkv:A, 2wkv:B, 2wkv:C, 2wkv:D, 2wl4:A, 2wl4:B, 2wl5:A, 2wl5:B, 2wl5:C
8 5f38:D 394 415 0.3955 0.4036 0.3831 2.05e-69 5f38:B, 5f38:C
9 5bz4:K 400 426 0.3955 0.3975 0.3732 4.38e-67 5bz4:B, 5bz4:D, 5bz4:F, 5bz4:H
10 4c2j:D 395 363 0.3333 0.3392 0.3691 1.20e-66 4c2j:A, 4c2j:B, 4c2j:C
11 1wl4:A 394 416 0.3756 0.3832 0.3630 5.85e-65
12 7fea:B 396 416 0.3856 0.3914 0.3726 7.96e-65 7ei4:A, 7ei4:B, 7ei4:C, 7ei4:D, 7fea:A, 7fea:C, 7fea:D
13 4o9c:C 393 416 0.3806 0.3893 0.3678 7.44e-62
14 7cw5:B 394 413 0.3657 0.3731 0.3559 7.59e-60 7cw5:A
15 8jg2:A 393 411 0.3557 0.3639 0.3479 8.50e-60 8jg2:B
16 6bn2:A 393 419 0.3557 0.3639 0.3413 1.96e-59
17 2ib8:D 393 419 0.3234 0.3308 0.3103 7.31e-52 2f2s:A, 2f2s:B, 2f2s:C, 2f2s:D, 2ib8:A, 2ib8:B, 2ib8:C, 2ib9:A, 2ib9:B, 2ib9:C, 2ib9:D, 2ibu:A, 2ibu:B, 2ibu:C, 2ibu:D, 2ibw:A, 2ibw:B, 2ibw:C, 2ibw:D, 2iby:A, 2iby:B, 2iby:C, 2iby:D
18 8gqn:A 390 410 0.3458 0.3564 0.3390 1.79e-51 8gqn:B, 8gqn:C, 8gqn:D
19 6l2c:A 402 423 0.3458 0.3458 0.3286 6.00e-49 6l2c:B, 6l2c:C, 6l2c:D
20 6bjb:A 384 376 0.2935 0.3073 0.3138 1.08e-47 6bjb:B
21 6aqp:C 399 416 0.3358 0.3383 0.3245 2.44e-47 6aqp:A, 6aqp:B, 6aqp:D, 6are:A, 6are:B, 6are:C, 6are:D
22 6bja:A 382 411 0.3184 0.3351 0.3114 5.75e-47
23 6hsj:B 390 326 0.1816 0.1872 0.2239 9.05e-05 6hsp:B
24 6esq:A 392 317 0.1841 0.1888 0.2334 7.44e-04 6esq:B, 6esq:C, 6esq:D
25 7pyt:B 392 153 0.0796 0.0816 0.2092 0.006 7pyt:D, 7yxm:B, 7yxm:D
26 5lnq:A 430 139 0.0871 0.0814 0.2518 0.099 5lnq:B, 5lnq:D, 5lot:A, 5lot:B, 5lot:D, 3zbn:A, 3zbn:B, 3zbn:D
27 4f32:B 423 60 0.0522 0.0496 0.3500 0.35 4f32:A
28 6kvs:A 313 93 0.0622 0.0799 0.2688 0.54 6kvs:B
29 2ji6:A 559 105 0.0547 0.0394 0.2095 1.1 2c31:A, 2c31:B, 2ji6:B, 2ji7:A, 2ji7:B, 2ji8:A, 2ji8:B, 2ji9:A, 2ji9:B, 2jib:A, 2jib:B
30 6smp:B 417 95 0.0647 0.0624 0.2737 1.1 6smo:B, 6smo:D, 6smo:F, 6smp:E, 6smp:H, 6smp:K
31 2qnx:A 334 170 0.1070 0.1287 0.2529 1.5 2qnx:B, 2qny:A, 2qny:B, 2qnz:A, 2qnz:B, 2qo0:A, 2qo0:B, 2qo1:A, 2qo1:B, 2qx1:A, 2qx1:B, 1u6s:A, 1u6s:B
32 7m7f:A 1390 37 0.0373 0.0108 0.4054 1.8 2fr0:A, 2fr1:A, 7m7i:A
33 1gkp:A 458 54 0.0498 0.0437 0.3704 3.4 1gkp:B, 1gkp:C, 1gkp:D, 1gkp:E, 1gkp:F, 1gkq:A, 1gkq:B, 1gkq:C, 1gkq:D
34 7tbw:A 1928 57 0.0498 0.0104 0.3509 5.0
35 1ox0:A 414 35 0.0274 0.0266 0.3143 5.1 2alm:A, 1oxh:A, 1oxh:B, 1oxh:C, 1oxh:D
36 7roq:A 1831 57 0.0498 0.0109 0.3509 5.9
37 7tby:A 1788 57 0.0498 0.0112 0.3509 6.1 7tc0:A
38 4yzo:C 347 89 0.0647 0.0749 0.2921 6.9 4yzo:D
39 8vda:A 311 69 0.0498 0.0643 0.2899 7.7
40 7s6c:B 891 37 0.0373 0.0168 0.4054 8.0
41 5kof:A 407 64 0.0423 0.0418 0.2656 8.1 2aq7:A, 2aq7:B, 2aq7:D, 2aqb:A, 2aqb:B, 2aqb:D, 2bui:A, 2bui:B, 2bui:C, 2bui:D, 1fj4:A, 1fj4:B, 1fj4:C, 1fj4:D, 1fj8:A, 1fj8:B, 1fj8:C, 1fj8:D, 5kof:B, 6okc:A, 6okc:B, 6okf:A, 6okf:B, 8sms:B, 8sms:A, 7sqi:B, 7sqi:A, 7sz9:A, 7sz9:B, 2vb8:A, 2vb8:B, 2vb8:C, 2vb8:D, 2vba:A, 2vba:B
42 3a3e:B 433 59 0.0398 0.0370 0.2712 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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