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BioLiP
>protein
SEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELV
AEERSN

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ibj:A 86 86 1.0000 1.0000 1.0000 1.40e-60
2 3ner:B 91 76 0.5930 0.5604 0.6711 9.97e-35 3ner:A
3 3ozz:B 82 81 0.5930 0.6220 0.6296 1.12e-34
4 1awp:A 86 76 0.5581 0.5581 0.6316 2.56e-34 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
5 1aw3:A 94 84 0.5930 0.5426 0.6071 1.67e-33 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
6 2i96:A 108 84 0.5930 0.4722 0.6071 2.56e-33 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
7 1hko:A 104 85 0.5930 0.4904 0.6000 2.96e-33 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
8 2i89:A 90 76 0.5698 0.5444 0.6447 3.90e-33 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
9 4b8n:B 90 74 0.3837 0.3667 0.4459 1.32e-15 4b8n:A, 4b8n:C, 4b8n:D
10 1cxy:A 81 80 0.3023 0.3210 0.3250 1.69e-13
11 3lf5:A 87 72 0.3256 0.3218 0.3889 2.02e-13 3lf5:B
12 7bwh:A 88 79 0.3023 0.2955 0.3291 3.54e-13
13 1x3x:A 82 72 0.3488 0.3659 0.4167 2.88e-12 1x3x:B
14 1kbi:A 504 50 0.3140 0.0536 0.5400 3.25e-11 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
15 1mj4:A 79 72 0.2907 0.3165 0.3472 1.31e-08
16 1sox:A 463 81 0.3372 0.0626 0.3580 2.77e-08 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
17 8tgb:A 108 48 0.2093 0.1667 0.3750 4.79e-08 8tgb:B
18 6nzx:A 76 75 0.2326 0.2632 0.2667 0.016
19 3ib9:A 521 37 0.1744 0.0288 0.4054 0.67 3ib9:B, 1xny:A, 1xny:B
20 4wt7:A 294 41 0.1628 0.0476 0.3415 4.1 4wt7:B
21 4jz6:A 484 61 0.2093 0.0372 0.2951 5.4
22 4nq8:B 301 40 0.1395 0.0399 0.3000 5.6 4nq8:A
23 2pyb:A 151 73 0.2791 0.1589 0.3288 7.2 2pyb:B, 2pyb:C, 2pyb:D
24 8c8v:A 1032 19 0.1279 0.0107 0.5789 9.1 8c8u:A, 8c8w:A, 8c9d:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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