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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRY
FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI
TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ
SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEI

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2c3e:A 293 293 1.0000 1.0000 1.0000 0.0 1okc:A
2 4c9q:B 290 292 0.5256 0.5310 0.5274 2.27e-99 4c9g:A, 4c9h:A, 4c9h:B, 4c9j:A, 4c9j:B, 4c9q:A
3 6gci:A 292 292 0.5222 0.5240 0.5240 3.94e-96
4 8hbw:A 290 292 0.2321 0.2345 0.2329 8.21e-19 8g8w:A, 8j1n:A
5 8gym:m2 318 171 0.1672 0.1541 0.2865 7.19e-08 8gym:M2
6 8gym:m2 318 289 0.2253 0.2075 0.2284 2.08e-05 8gym:M2
7 4mif:B 581 49 0.0478 0.0241 0.2857 0.98 4mif:A, 4mif:C, 4mif:D, 4mig:A, 4mig:B, 4mig:C, 4mig:D, 4mih:A, 4mih:B, 4mih:C, 4mih:D, 4mih:E, 4mih:F, 4mih:G, 4mih:H
8 5nja:D 444 85 0.0785 0.0518 0.2706 2.0 5nja:B
9 6kbh:A 765 66 0.0614 0.0235 0.2727 2.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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