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BioLiP
>protein
SDPLVVAASIIGILHLILWILDRLFFKSIYRFFEHGLK

The query sequence (length=38) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2rlf:C 38 38 1.0000 1.0000 1.0000 2.67e-21
2 2ly0:A 31 27 0.6842 0.8387 0.9630 3.94e-12 2muw:C
3 3of1:A 246 23 0.2632 0.0407 0.4348 0.33
4 6c6g:A 457 30 0.2895 0.0241 0.3667 1.1 6c6g:B
5 3pya:A 688 21 0.2632 0.0145 0.4762 1.9 4lix:A, 3pyb:A
6 6slf:A 398 17 0.2895 0.0276 0.6471 3.3 6slf:B, 6slf:C, 6slf:D
7 5c8w:B 121 24 0.2632 0.0826 0.4167 3.8 5c6c:A, 5c6c:B, 5c8w:A, 5c8w:C, 5c8w:D, 5c8w:E, 5c8w:F
8 6rsx:A 266 23 0.2632 0.0376 0.4348 5.9
9 1js8:A 382 26 0.2632 0.0262 0.3846 6.8 1js8:B
10 6ny5:A 386 40 0.3947 0.0389 0.3750 7.4 6ny5:B
11 1zsw:A 328 11 0.1842 0.0213 0.6364 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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