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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ycs:C 68 68 1.0000 1.0000 1.0000 1.54e-45 2c62:A, 2c62:B, 2phe:A, 2phe:B, 4usg:A, 4usg:B, 6ycs:A, 6ycs:B, 6ycs:D
2 5zg9:A 83 63 0.3529 0.2892 0.3810 5.68e-08 4bhm:A, 4bhm:D, 4bhm:B, 4bhm:F, 4bhm:C
3 1sza:B 140 46 0.1912 0.0929 0.2826 1.5 2bf0:X
4 6s3t:A 374 39 0.1471 0.0267 0.2564 1.9 6rux:A, 6rux:B, 6rux:C, 6s3t:B, 6s3t:S, 6s3t:T
5 3r0q:G 353 51 0.2206 0.0425 0.2941 2.1 3r0q:C, 3r0q:A, 3r0q:E
6 5f55:A 705 20 0.1324 0.0128 0.4500 2.6 5f54:A, 5f56:A, 6lrd:A
7 8tg3:A 187 27 0.1324 0.0481 0.3333 3.5 8tg4:A
8 3lxd:A 409 28 0.1471 0.0244 0.3571 4.9
9 6l1x:A 708 31 0.1324 0.0127 0.2903 5.8
10 6fwf:A 712 31 0.1324 0.0126 0.2903 5.8
11 6l3h:A 741 31 0.1324 0.0121 0.2903 5.8 6l3h:B
12 1ddz:A 481 21 0.1324 0.0187 0.4286 6.7 1ddz:B
13 3c0g:B 320 23 0.1324 0.0281 0.3913 7.2 3c0g:A, 3c0h:A, 3c0h:B, 3c0i:A, 3mfr:A, 3mfs:A, 3mfu:A, 7oai:A, 7oai:B, 7oai:C, 7oai:D, 7oaj:A, 7oaj:B, 7oaj:C, 7oaj:D, 7oak:A, 7oak:B, 7oak:C, 7oak:D, 7oal:A, 7oal:B, 7oal:C, 7oal:D
14 1dii:A 515 17 0.1324 0.0175 0.5294 8.7 1dii:B, 1diq:A, 1diq:B, 1wve:A, 1wve:B, 1wvf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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