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BioLiP
>protein
SDLQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSV
YCSILEALEQGASG

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1q08:A 94 94 1.0000 1.0000 1.0000 6.71e-64 1q08:B, 1q09:A, 1q0a:A, 1q0a:B
2 4wlw:A 130 86 0.3617 0.2615 0.3953 1.22e-11 7c17:G, 7c17:H, 6ldi:G, 6ldi:H, 1q05:A, 1q05:B, 4wls:A, 4wls:B, 6xh7:G, 6xh7:H, 6xh8:G, 6xh8:H
3 5gpe:D 129 86 0.3404 0.2481 0.3721 5.41e-10 5gpe:A, 5gpe:B, 5gpe:C, 5gpe:E, 5gpe:F, 5gpe:G, 5gpe:H
4 5crl:B 119 89 0.3085 0.2437 0.3258 2.81e-09
5 6jni:A 145 91 0.3191 0.2069 0.3297 1.10e-08 6jgw:B, 6jgw:A, 6jgx:A, 6jgx:B, 6jni:B, 6jni:H, 6jni:C, 6jni:D, 6jni:E, 6jni:F, 6jni:G, 6jyw:A, 6jyw:B
6 4ua1:B 125 87 0.2553 0.1920 0.2759 9.98e-08 4ua1:A
7 1r8d:A 109 65 0.2021 0.1743 0.2923 0.33 1r8d:B
8 3gp4:A 132 68 0.2128 0.1515 0.2941 0.67 3gp4:B
9 2vz4:A 100 66 0.1915 0.1800 0.2727 2.2
10 4fai:B 305 36 0.1383 0.0426 0.3611 2.3 4fai:A, 4fbe:A, 4fbe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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