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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDKWEKEFRIRSYEPYSNIAEWADKLMTKKYSDLDNPTGISVKAGDDIIVLVGDTYGQNISMQCIWETGTEYKQTASSGD
VYMLNPGVNKLTMKGEGQLFVMYNTELTSNTAKPIKIHIPLGSGTVNGFFDLKEHKTDEKYAELLKKSTHKYFCIRGEKI
MFYFHRNKLLEYVPNNILSAIHLWDNIVGWQQELMGIDDVRPSQVNNHLFAISPEGSYMWASDYQIGFVYTYLGNILLED
NVMAAEDNAWGPAHEIGHVHQAAINWASSTESSNNLFSNFIIYKLGKYKSRGNGLGSVATARYANGQAWYNMGDATHQNE
DTETHMRMNWQLWIYYHRCEYKTDFWQTLFKLMREVNMTEGEDPGKKQLEFAKMASKAANQNLTDFFEMWGFFEPVNTTI
EQYGTYKYYVSDAMIREAKEYMAQFPAPKHAFQYIEDRKKSEFPSNDYRYSAVGDVGYYTQFKENQKITKAITAELAGRK
VSIQNGDEAVAFELRENDENGKLLYFSTFTTFEIPSSILMVNAKLYAVQADGKRILL

The query sequence (length=537) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kd2:A 591 536 0.9963 0.9052 0.9981 0.0 5kd5:A, 5kd8:A
2 7sci:A 487 420 0.2253 0.2485 0.2881 2.62e-34 7yx8:A, 7yx8:B
3 7jfs:A 958 525 0.2328 0.1305 0.2381 7.98e-09 7jnb:A, 7jnd:A, 7jnf:A, 5kdj:B, 5kdj:A, 5kdn:A, 5kds:A, 5kdu:A
4 6xsz:A 510 416 0.1937 0.2039 0.2500 1.86e-05 6xsz:B, 6xsz:C, 6xsz:D, 6xt1:A, 6xt1:B, 6xt1:C, 6xt1:D
5 4xb1:A 319 69 0.0484 0.0815 0.3768 1.2 4xb1:B, 4xb2:A, 4xb2:B
6 4d0l:E 479 109 0.0577 0.0647 0.2844 1.5 5c4g:E, 4d0l:A, 4d0l:C, 4d0m:A, 4d0m:C, 4d0m:G, 4d0m:I, 4d0m:M, 4d0m:O, 4d0m:Q, 4d0m:S, 4d0m:W, 4d0m:Y, 4d0m:c, 4d0m:g, 5euq:E, 5fbl:A, 5fbq:A, 5fbr:A, 5fbv:A, 5fbw:A, 6gl3:A, 8q6f:A, 8q6g:A, 8q6h:A, 8vof:A, 4wae:A, 4wag:A
7 6rxt:UU 902 36 0.0317 0.0188 0.4722 1.9 6rxu:UU, 6rxv:UU, 6rxx:UU, 6rxy:UU, 6rxz:UU
8 1b0p:A 1231 53 0.0391 0.0171 0.3962 2.2 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
9 2cjp:B 319 131 0.0521 0.0878 0.2137 3.7
10 6sbq:A 891 146 0.0652 0.0393 0.2397 4.0 6ea1:A, 6ea2:A, 6eaa:A, 6eab:A, 3ebg:A, 3ebh:A, 3ebi:A, 6ee3:A, 6ee4:A, 6ee6:A, 6eed:A, 8ewz:A, 8ex3:A, 8eyd:A, 8eye:A, 8eyf:A, 8ez2:A, 4j3b:A, 4k5l:A, 4k5m:A, 4k5n:A, 4k5o:A, 4k5p:A, 3q43:A, 3q44:A, 4r5t:A, 4r5v:A, 4r5x:A, 6sbr:A, 8slo:A, 8svl:A, 8t6h:A, 8t7p:A, 3t8v:A, 8t83:A, 4x2u:A, 5xm7:A, 5y19:A, 5y1h:A, 5y1k:A, 5y1q:A, 5y1r:A, 5y1s:A, 5y1t:A, 5y1v:A, 5y1w:A, 5y1x:A, 5y3i:A, 4zqt:A, 4zw3:A, 4zw5:A, 4zw6:A, 4zw7:A, 4zw8:A, 4zx3:A, 4zx4:A, 4zx5:A, 4zx6:A
11 7wb0:A 797 30 0.0205 0.0138 0.3667 4.9
12 7way:A 960 30 0.0205 0.0115 0.3667 5.3 7waz:A, 7wb1:A
13 3jb9:G 95 44 0.0242 0.1368 0.2955 6.6 3jb9:l
14 2a8j:B 313 83 0.0447 0.0767 0.2892 8.2 2a8j:A, 2a8m:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218