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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SDKFAGMYKLWTFIDPRRTLIFIVAFQIMLGILIHMIVLGSDLNWHNDGIPRFYSPRPVDVAVGPAGIPLEIPGSPMPQA
RNYN

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7c9r:9 84 84 1.0000 1.0000 1.0000 2.94e-58
2 7c9r:Q 78 83 0.5952 0.6410 0.6024 1.58e-31
3 5b5m:A 60 52 0.3810 0.5333 0.6154 8.66e-19 5b5m:9, 5b5m:D, 5b5m:F, 5b5m:I, 5b5m:K, 5b5m:O, 5b5m:Q, 5b5m:S, 5b5m:U, 5b5m:W, 5b5m:Y, 5b5m:1, 5b5m:3, 5b5m:5, 5b5m:7, 5b5m:AA, 5b5m:m, 5b5m:l, 5b5m:p, 5b5m:r, 5b5m:u, 5b5m:w, 5b5m:AC, 5b5m:AE, 5b5m:AG, 5b5m:AI, 5b5m:AK, 5b5m:d, 5b5m:f, 5b5m:h, 5b5m:j, 5b5n:A, 5b5n:9, 5b5n:D, 5b5n:F, 5b5n:I, 5b5n:K, 5b5n:O, 5b5n:Q, 5b5n:S, 5b5n:U, 5b5n:W, 5b5n:Y, 5b5n:1, 5b5n:3, 5b5n:5, 5b5n:7, 5b5n:AA, 5b5n:m, 5b5n:j, 5b5n:l, 5b5n:p, 5b5n:r, 5b5n:u, 5b5n:w, 5b5n:AC, 5b5n:AE, 5b5n:AG, 5b5n:AI, 5b5n:AK, 5b5n:d, 5b5n:f, 5b5n:h, 7c52:7, 7c52:S, 7c52:A, 7c52:D, 7c52:F, 7c52:9, 7c52:I, 7c52:K, 7c52:O, 7c52:Q, 7c52:U, 7c52:W, 7c52:Y, 7c52:1, 7c52:3, 7c52:5, 4v8k:AA, 4v8k:AD, 4v8k:A9, 4v8k:AF, 4v8k:AI, 4v8k:AK, 4v8k:AO, 4v8k:AQ, 4v8k:AS, 4v8k:AW, 4v8k:AU, 4v8k:AY, 4v8k:A1, 4v8k:A3, 4v8k:A5, 4v8k:A7, 4v8k:BA, 4v8k:BD, 4v8k:B9, 4v8k:BF, 4v8k:BI, 4v8k:BK, 4v8k:BO, 4v8k:BQ, 4v8k:BS, 4v8k:BU, 4v8k:BW, 4v8k:BY, 4v8k:B1, 4v8k:B3, 4v8k:B5, 4v8k:B7, 3wmm:A, 3wmm:7, 3wmm:9, 3wmm:D, 3wmm:F, 3wmm:I, 3wmm:K, 3wmm:O, 3wmm:Q, 3wmm:S, 3wmm:U, 3wmm:W, 3wmm:Y, 3wmm:1, 3wmm:3, 3wmm:5, 5y5s:7, 5y5s:S, 5y5s:A, 5y5s:D, 5y5s:F, 5y5s:I, 5y5s:K, 5y5s:O, 5y5s:Q, 5y5s:U, 5y5s:W, 5y5s:Y, 5y5s:1, 5y5s:3, 5y5s:5, 5y5s:9
4 7c9r:5 74 70 0.4048 0.4595 0.4857 1.50e-16 7c9r:A, 7c9r:D, 7c9r:F, 7c9r:I, 7c9r:K, 7c9r:O, 7c9r:S, 7c9r:U, 7c9r:W, 7c9r:Y, 7c9r:1, 7c9r:3, 7c9r:7
5 7vrj:Y 63 46 0.2857 0.3810 0.5217 3.46e-11 7vrj:D, 7vrj:F, 7vrj:W
6 8wdv:Y 64 46 0.2619 0.3438 0.4783 9.55e-11 7vrj:S, 7vrj:U, 8wdu:U, 8wdu:W, 8wdu:D, 8wdu:F, 8wdu:S, 8wdu:Y, 8wdv:W, 8wdv:D, 8wdv:F, 8wdv:S, 8wdv:U
7 7vrj:7 44 40 0.2381 0.4545 0.5000 3.30e-07 7vrj:A, 7vrj:9, 7vrj:I, 7vrj:K, 7vrj:O, 7vrj:Q, 7vrj:1, 7vrj:5, 8wdu:7, 8wdu:9, 8wdu:O, 8wdu:A, 8wdu:I, 8wdu:K, 8wdu:Q, 8wdu:1, 8wdu:5, 8wdv:7, 8wdv:O, 8wdv:A, 8wdv:9, 8wdv:I, 8wdv:K, 8wdv:Q, 8wdv:1, 8wdv:5
8 7xxf:S 58 57 0.2381 0.3448 0.3509 6.68e-06 7xxf:9, 7xxf:D, 7xxf:A, 7xxf:F, 7xxf:I, 7xxf:K, 7xxf:O, 7xxf:Q, 7xxf:U, 7xxf:W, 7xxf:Y, 7xxf:1, 7xxf:3, 7xxf:5, 7xxf:7
9 6z5r:T 48 40 0.2024 0.3542 0.4250 4.21e-05 6z5r:C, 6z5r:E, 6z5r:A, 6z5r:G, 6z5r:J, 6z5r:N, 6z5r:P, 6z5r:9, 6z5r:R, 6z5r:V, 6z5r:Y, 6z5r:1, 6z5r:3, 6z5r:5, 6z5r:7, 6z5s:R, 6z5s:1, 6z5s:Y, 6z5s:3, 6z5s:5, 6z5s:V, 6z5s:T, 6z5s:A, 6z5s:C, 6z5s:E, 6z5s:P, 6z5s:N, 6z5s:J, 6z5s:G
10 7oy8:8 48 40 0.1786 0.3125 0.3750 4.54e-05 7eqd:A, 7eqd:D, 7eqd:9, 7eqd:F, 7eqd:I, 7eqd:K, 7eqd:O, 7eqd:Q, 7eqd:S, 7eqd:U, 7eqd:W, 7eqd:Y, 7eqd:1, 7eqd:3, 7eqd:5, 7eqd:7, 7oy8:Z, 7oy8:X, 7oy8:2, 7oy8:4, 7oy8:6, 7oy8:D, 7oy8:A, 7oy8:E, 7oy8:F, 7oy8:G, 7oy8:J, 7oy8:N, 7oy8:R, 7oy8:T, 7oy8:V
11 7o0u:ak 71 44 0.1786 0.2113 0.3409 8.10e-05 7o0u:ah, 7o0u:ac, 7o0u:af, 7o0u:aa, 7o0u:ab, 7o0u:ad, 7o0u:ae, 7o0u:ag, 7o0u:ai, 7o0u:aj, 7o0u:al, 7o0u:am, 7o0u:an, 7o0u:ao, 7o0u:ap, 7o0v:af, 7o0v:ah, 7o0v:ac, 7o0v:ae, 7o0v:aa, 7o0v:ab, 7o0v:ad, 7o0v:ag, 7o0v:ai, 7o0v:aj, 7o0v:ak, 7o0v:al, 7o0v:am, 7o0v:an, 7o0v:ao, 7o0v:ap, 7o0w:ac, 7o0w:af, 7o0w:aa, 7o0w:ab, 7o0w:ad, 7o0w:ae, 7o0w:ag, 7o0w:ah, 7o0w:ai, 7o0w:aj, 7o0w:ak, 7o0w:al, 7o0w:am, 7o0w:an, 7o0w:ao, 7o0w:ap, 7o0x:ah, 7o0x:ac, 7o0x:af, 7o0x:aa, 7o0x:ab, 7o0x:ad, 7o0x:ae, 7o0x:ag, 7o0x:ai, 7o0x:aj, 7o0x:ak, 7o0x:al, 7o0x:am, 7o0x:ao, 7o0x:an, 7o0x:ap
12 6et5:3 58 48 0.2143 0.3103 0.3750 9.57e-05 6et5:P, 6et5:S, 6et5:V, 6et5:Y, 6et5:b, 6et5:e, 6et5:h, 6et5:k, 6et5:n, 6et5:q, 6et5:t, 6et5:w, 6et5:z, 6et5:6, 6et5:F, 6et5:K
13 7yml:D 56 42 0.1905 0.2857 0.3810 1.94e-04 8b64:a, 8b64:e, 8b64:d, 8b64:b, 8b64:f, 8b64:t, 8b64:u, 8b64:s, 8b64:r, 8b64:o, 8b64:n, 8b64:k, 8b64:j, 8b64:i, 8b64:g, 7yml:A, 7yml:F, 7yml:I, 7yml:K, 7yml:O, 7yml:Q, 7yml:S, 7yml:V, 7yml:Y
14 7pil:AB 55 42 0.1786 0.2727 0.3571 2.62e-04 7f0l:A, 7f0l:D, 7f0l:F, 7f0l:I, 7f0l:K, 7f0l:O, 7f0l:Q, 7f0l:S, 7f0l:V, 7f0l:Y, 7f0l:1, 7f0l:3, 7f0l:5, 7f0l:7, 7pil:AA, 7pil:AC, 7pil:AD, 7pil:AE, 7pil:AF, 7pil:AG, 7pil:AH, 7pil:AI, 7pil:AJ, 7pil:AK, 7pil:AL, 7pil:AM, 7pil:AN, 7pqd:AA, 7pqd:AB, 7pqd:AC, 7pqd:AD, 7pqd:AE, 7pqd:AF, 7pqd:AG, 7pqd:AH, 7pqd:AI, 7pqd:AJ, 7pqd:AK, 7pqd:AL, 7pqd:AM, 7pqd:AN, 7pqd:aa, 7pqd:ab, 7pqd:ac, 7pqd:ad, 7pqd:ae, 7pqd:af, 7pqd:ag, 7pqd:ah, 7pqd:ai, 7pqd:aj, 7pqd:ak, 7pqd:al, 7pqd:am, 7pqd:an, 4v9g:AT, 4v9g:AV, 4v9g:A3, 4v9g:A7, 4v9g:AD, 4v9g:AF, 4v9g:A1, 4v9g:AJ, 4v9g:A2, 4v9g:AN, 4v9g:AP, 4v9g:AZ, 4v9g:A5, 4v9g:AX, 4v9g:B5, 4v9g:BT, 4v9g:BV, 4v9g:B3, 4v9g:B7, 4v9g:BD, 4v9g:BF, 4v9g:B1, 4v9g:B2, 4v9g:BP, 4v9g:BZ, 4v9g:BN, 4v9g:BX, 4v9g:BJ, 7va9:A, 7va9:9, 7va9:D, 7va9:F, 7va9:I, 7va9:K, 7va9:O, 7va9:Q, 7va9:S, 7va9:U, 7va9:W, 7va9:Y, 7va9:1, 7va9:7, 7va9:a, 7va9:3, 7va9:d, 7va9:f, 7va9:i, 7va9:k, 7va9:o, 7va9:q, 7va9:s, 7va9:u, 7va9:w, 7va9:y, 7va9:5, 7va9:6, 7vb9:A, 7vb9:9, 7vb9:D, 7vb9:F, 7vb9:I, 7vb9:K, 7vb9:O, 7vb9:7, 7vb9:a, 7vb9:d, 7vb9:f, 7vb9:i, 7vb9:k, 7vb9:o, 7vb9:q, 7vb9:s, 7vb9:u, 7vb9:w, 7vb9:y, 7vb9:5, 7vb9:6, 7vb9:Q, 7vnm:A, 7vnm:9, 7vnm:D, 7vnm:F, 7vnm:I, 7vnm:O, 7vnm:K, 7vnm:Q, 7vnm:S, 7vnm:U, 7vnm:W, 7vnm:7, 7vnm:1, 7vny:A, 7vny:D, 7vny:9, 7vny:F, 7vny:I, 7vny:K, 7vny:O, 7vny:Q, 7vny:S, 7vny:U, 7vny:W, 7vny:3, 7vny:1, 7vny:7, 7vor:A, 7vor:9, 7vor:D, 7vor:F, 7vor:I, 7vor:K, 7vor:O, 7vor:Q, 7vor:S, 7vor:U, 7vor:W, 7vor:3, 7vor:1, 7vor:7, 7vor:a, 7vor:b9, 7vor:d, 7vor:f, 7vor:i, 7vor:k, 7vor:o, 7vor:q, 7vor:s, 7vor:u, 7vor:w, 7vor:5, 7vor:b1, 7vor:6, 7vot:A, 7vot:9, 7vot:D, 7vot:F, 7vot:I, 7vot:K, 7vot:O, 7vot:Q, 7vot:S, 7vot:U, 7vot:W, 7vot:3, 7vot:1, 7vot:7, 7vot:a, 7vot:b9, 7vot:d, 7vot:f, 7vot:i, 7vot:k, 7vot:o, 7vot:q, 7vot:s, 7vot:u, 7vot:w, 7vot:5, 7vot:b1, 7vot:6, 7voy:A, 7voy:D, 7voy:F, 7voy:I, 7voy:K, 7voy:O, 7voy:Q, 7voy:S, 7voy:U, 7voy:W, 7voy:Y, 7voy:1, 7voy:7, 7voy:9, 7voy:4, 7voy:6, 7voy:C, 7vy2:A, 7vy2:D, 7vy2:F, 7vy2:I, 7vy2:K, 7vy2:O, 7vy2:Q, 7vy2:S, 7vy2:V, 7vy2:Y, 7vy2:1, 7vy2:3, 7vy2:5, 7vy2:7, 7vy2:a, 7vy2:d, 7vy2:f, 7vy2:i, 7vy2:k, 7vy2:o, 7vy2:q, 7vy2:s, 7vy2:v, 7vy2:y, 7vy2:01, 7vy2:03, 7vy2:05, 7vy2:07, 7vy3:Y, 7vy3:A, 7vy3:D, 7vy3:F, 7vy3:I, 7vy3:K, 7vy3:O, 7vy3:Q, 7vy3:S, 7vy3:V
15 8k5o:3 51 40 0.1667 0.2745 0.3500 0.001
16 7ddq:o 53 42 0.1667 0.2642 0.3333 0.002 7ddq:n, 7ddq:t, 7ddq:s, 7ddq:u, 7ddq:r, 7ddq:a, 7ddq:b, 7ddq:e, 7ddq:d, 7ddq:k, 7ddq:j, 7ddq:f, 7ddq:i, 7ddq:g
17 7vrj:3 65 35 0.1786 0.2308 0.4286 0.002 8wdu:3, 8wdv:3
18 8k5o:w 63 40 0.1667 0.2222 0.3500 0.012 8k5o:Y, 8k5o:b, 8k5o:k, 8k5o:n, 8k5o:t, 8k5o:z, 8k5o:6, 8k5o:F, 8k5o:K, 8k5o:P, 8k5o:S, 8k5o:V, 8k5o:e, 8k5o:h, 8k5o:q
19 6rxt:CD 420 36 0.1667 0.0333 0.3889 0.57 5oql:U, 6rxu:CD, 6rxv:CD, 6rxx:CD, 6rxy:CD, 6rxz:CD
20 6ged:A 295 29 0.1429 0.0407 0.4138 0.71
21 6oyt:D 253 85 0.2738 0.0909 0.2706 1.7 6e2m:B, 6e2n:B, 6oyt:B, 6oyt:C, 5uor:A, 5up3:B, 5v24:A, 6xih:B
22 3aw5:A 438 14 0.1071 0.0205 0.6429 3.9 6k3d:A, 8p4g:A, 8p4g:B
23 8gzh:C 1052 22 0.0952 0.0076 0.3636 4.3 8gzg:C
24 3ce6:A 486 51 0.1786 0.0309 0.2941 6.3 3ce6:B, 3ce6:C, 3ce6:D, 3dhy:A, 3dhy:B, 3dhy:C, 3dhy:D, 2ziz:A, 2ziz:B, 2ziz:C, 2ziz:D, 2zj0:A, 2zj0:B, 2zj0:C, 2zj0:D, 2zj1:A, 2zj1:B, 2zj1:C, 2zj1:D
25 5dvx:A 260 39 0.2024 0.0654 0.4359 6.4 8co0:A, 8co0:C, 8co0:E, 8co0:G, 5dvx:B, 6fe0:A, 6fe0:B, 6fe0:C, 6fe0:D, 6fe1:A, 6fe1:B, 6fe1:C, 6fe1:D, 6fe2:A, 6fe2:B, 6fe2:C, 6fe2:D, 5fl4:A, 5fl4:B, 5fl4:C, 5fl4:D, 5fl5:A, 5fl5:B, 5fl5:C, 5fl5:D, 5fl6:A, 5fl6:B, 5fl6:C, 5fl6:D, 6g98:A, 6g98:B, 6g98:C, 6g98:D, 6g9u:A, 6g9u:B, 6g9u:C, 6g9u:D, 3iai:A, 3iai:B, 3iai:C, 3iai:D, 7pom:A, 7pom:B, 7pom:C, 7pom:D, 8q18:A, 8q18:B, 8q18:C, 8q18:D, 8q19:A, 8q19:B, 8q19:C, 8q19:D, 8q1a:A, 8q1a:B, 8q1a:C, 8q1a:D, 6qn2:A, 6qn2:B, 6qn2:C, 6qn2:D, 6qn5:A, 6qn5:B, 6qn5:C, 6qn5:D, 6qn6:A, 6qn6:B, 6qn6:C, 6qn6:D, 6qut:A, 6qut:B, 6qut:C, 6qut:D, 6rqn:A, 6rqq:A, 6rqq:C, 6rqu:A, 6rqw:A, 6tl5:A, 6tl5:B, 6tl5:C, 6tl5:D, 6tl6:A, 6tl6:B, 6tl6:C, 6tl6:D, 6y74:A, 6y74:B
26 6x1o:C 624 37 0.1548 0.0208 0.3514 7.1 6x1o:A, 6x6u:A, 6x6u:C
27 6tit:A 432 16 0.1190 0.0231 0.6250 9.3 5i2m:C, 5oyl:A
28 5hmd:A 456 27 0.1190 0.0219 0.3704 9.3 5hmd:B, 5hme:A, 5hme:B, 5hmf:A, 5hmf:B, 4lh8:A, 4lh8:B, 3ls9:A, 3ls9:B, 3lsb:A, 3lsb:B, 3lsc:A, 3lsc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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