Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLAD
CLQKIRDMITEASQTPKEPTKEDVKLHRIRIENMNRERLRQKRIHSAVKTSRRVDMD

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nql:BL 137 137 1.0000 1.0000 1.0000 1.52e-100
2 6yss:y 139 104 0.2117 0.2086 0.2788 1.23e-05 7jss:8, 7jsw:8, 7jsz:8, 7jt1:8, 7jt2:8, 7jt3:8, 7jt3:9, 4v95:AY, 6yst:y, 6ysu:y
3 4v63:AX 354 35 0.1168 0.0452 0.4571 0.010 4v4r:AY, 4v63:CX, 4v7p:AV, 4v7p:DV
4 4v4s:AY 365 34 0.1168 0.0438 0.4706 0.046 6c5l:AY, 6c5l:CY, 4v5e:AY, 4v5e:CY, 4v5j:AY, 4v5j:CY, 4v67:AX, 4v67:CX, 4v9n:AY, 4v9n:CY
5 7sa4:8 203 66 0.1898 0.1281 0.3939 0.087
6 8c6z:A 573 83 0.1752 0.0419 0.2892 1.00 8ovr:A
7 8gcc:A 707 41 0.1241 0.0240 0.4146 1.3 8gcc:B
8 7m5d:A 360 74 0.1971 0.0750 0.3649 1.4 8akn:W, 6b4v:JA, 6b4v:NC, 6boh:JA, 6boh:OC, 6bok:GD, 6bok:HD, 6dnc:MA, 8fzd:w, 8fze:w, 8fzg:w, 8fzh:w, 6gwt:v, 6gxm:v, 6gxn:v, 6gxo:v, 5j30:QY, 5j30:XY, 5j3c:QY, 5j3c:XY, 5j4d:JA, 5j4d:OC, 5o2r:v, 6orl:A, 6osk:A, 6osq:A
9 8oin:Aa 381 40 0.1168 0.0420 0.4000 1.8 8oip:Aa, 8oiq:Aa, 8oir:Aa, 8ois:Aa, 8oit:Aa
10 5xfo:A 315 37 0.0803 0.0349 0.2973 1.9 8h43:A, 8h43:B, 8h43:C, 4hcz:A, 4hcz:B, 7lky:B, 7lky:H, 7lky:A, 7lky:C, 7lky:D, 7lky:E, 7lky:F, 7lky:G, 6wat:AA, 6wat:AC, 6wat:BA, 6wat:BC, 6wat:CA, 6wat:CC, 6wat:DA, 6wat:DC, 6wat:EC, 6wat:EA, 6wat:FA, 6wat:FC, 6wat:GA, 6wat:GC, 6wat:HA, 6wat:HC, 6wat:IA, 6wat:IC, 6wat:JA, 6wat:JC, 6wat:KA, 6wat:KC, 6wat:OC, 6wat:LA, 6wat:LC, 6wat:MA, 6wat:MC, 6wat:NA, 6wat:NC, 6wat:OA, 6wav:A, 6wav:C, 6wav:B, 6wav:D, 5xfn:A, 5xfp:B, 5xfp:A, 5xfp:E, 5xfq:A, 5xfq:B
11 6xyw:Bz 123 43 0.1095 0.1220 0.3488 2.5
12 4fsx:A 680 30 0.0876 0.0176 0.4000 2.5 4fsx:B, 4ft2:B, 4ft2:A
13 7ubu:A 708 30 0.0876 0.0169 0.4000 2.9 4ft4:A, 4ft4:B
14 6c4i:v 362 36 0.1095 0.0414 0.4167 4.4 6c4h:v, 5czp:XY, 5czp:QY, 5dfe:QY, 5dfe:XY, 5h5u:4, 5mdv:7, 5mdw:7, 5mgp:z, 1ml5:Z, 7o1c:B9, 6og7:8, 6ogf:8, 6ogg:8, 7oj0:8, 6ost:7, 6ot3:A, 6ouo:A, 8p16:6, 8p17:6, 8p18:6, 8qk7:6, 5u4i:v, 5u9f:Z, 5u9g:Z
15 7nqh:BL 250 32 0.1022 0.0560 0.4375 5.8
16 8hja:B 122 28 0.0876 0.0984 0.4286 6.4
17 7y1u:A 723 63 0.1168 0.0221 0.2540 6.6
18 7aor:ax 161 89 0.1825 0.1553 0.2809 8.3 6hiv:DW, 6hiw:DW, 6hiz:DW, 7pua:DW, 7pub:DW, 6sg9:DW, 6sgb:DW
19 8hja:A 152 28 0.0876 0.0789 0.4286 8.9
20 7qy5:B 320 70 0.1825 0.0781 0.3571 9.2 7qy5:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218