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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDIADGQTQRFDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLDAQFFHMGMGFRR
RVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQYGL
SARGLAIDTYTDSKEEFPDFTAFWFDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGI
APMTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNPKGFGLLQLDRDFSHYQDIMG
WYNKRPSLWVEPRNKWGKGTIGLMEIPTTGETLNNIVCFWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGM
GGFSEGWAPGEHYPEKWARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSDSTDPVD
MRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMSLEHHHHH

The query sequence (length=524) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iox:A 524 524 1.0000 1.0000 1.0000 0.0 8iox:C, 8iox:D, 8iox:E, 8iox:F, 8iox:G, 8iox:H, 8iox:I, 8iox:J, 8iox:K, 8ip1:A, 8ip1:B
2 8ip2:A 478 497 0.3550 0.3891 0.3742 2.51e-95
3 7un8:A 297 50 0.0267 0.0471 0.2800 3.2 7un8:B, 7un8:C, 7un8:D, 7un8:E, 7un8:F, 7un9:A, 7un9:B, 7un9:C, 7un9:D, 7un9:I, 7un9:J, 7un9:E, 7un9:F, 7un9:K, 7un9:L, 7una:A, 7una:B, 7una:C
4 7al4:D 524 64 0.0382 0.0382 0.3125 5.4 7al4:C, 7al4:B, 7al4:A
5 3q2w:A 541 28 0.0248 0.0240 0.4643 6.2 1ncj:A, 4num:A, 4num:B, 4num:C, 4num:D, 4nup:A, 4nup:B, 4nup:C, 4nuq:A, 2qvi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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