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BioLiP
>protein
SDGDTAMKAFNDTFWDPNAKMFWKDSKREKHQDFWVEAELWELVMDAYQHTSDPALKAELKTQIDDVYDGTVAKYGQDWT
NNPFNDNIMWWAMGSARAYQITGNPRYLEAARDHFDFVYDTQWDEEFANGGIWWLNSDHNTKNACINFPAAQAALYLYDI
TKDEHYLNAATKIFRWGKTMLTDGNGKVFDRIEIEHGAVPDATHYNQGTYIGSAVGLYKATGNAVYLDDAVKAAKFTKNH
LVDSNGVLNYEGPNGDLKGGKTILMRNLAHLQKTLDETGQYPEFSAEFDEWLAFNIEMAWSHQNSDHIVDGNWATYESWS
SAAAVQALNG

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5agd:B 344 336 1.0000 0.9593 0.9821 0.0 5agd:A, 4boj:A, 4boj:B, 4boj:C, 4d4b:A, 4d4b:B, 4d4c:A, 4d4c:B, 4d4d:A, 4d4d:B, 5m77:A, 5m77:B, 5n0f:A, 5n0f:B, 7nl5:A, 6zbm:A, 6zbw:A, 6zbw:B, 6zbx:A, 6zbx:B
2 6shm:A 339 289 0.2939 0.2861 0.3356 6.67e-31 6y8f:A
3 8wbu:A 391 121 0.0939 0.0793 0.2562 0.064 7d5g:A, 8wbv:A
4 8wbu:A 391 176 0.1152 0.0972 0.2159 0.31 7d5g:A, 8wbv:A
5 8wbu:A 391 28 0.0394 0.0332 0.4643 4.5 7d5g:A, 8wbv:A
6 2d8l:A 363 81 0.0758 0.0689 0.3086 0.079 2gh4:A
7 2d8l:A 363 48 0.0485 0.0441 0.3333 2.9 2gh4:A
8 4g68:A 392 63 0.0576 0.0485 0.3016 0.21 4g68:B
9 8idp:A 446 69 0.0697 0.0516 0.3333 0.30 8idp:C, 8idp:B, 8idp:D, 8idq:A, 8idq:B, 8idq:C, 8idq:D
10 8idr:C 147 40 0.0485 0.1088 0.4000 1.00 8idr:A, 8idr:B, 8idr:D, 8idu:A, 8idu:B, 8idu:C, 8idu:D, 8idu:E, 8idu:F
11 8ht4:B 390 92 0.0848 0.0718 0.3043 1.7 8ht4:A
12 6rxy:Cz 275 92 0.0667 0.0800 0.2391 1.9 6rxz:Cz
13 7vcf:T 763 81 0.0606 0.0262 0.2469 2.8
14 5meh:A 438 192 0.1424 0.1073 0.2448 2.9 4ayp:A, 4ayq:A, 4ayr:A, 8b5m:A, 5ne5:A
15 2q02:A 272 65 0.0636 0.0772 0.3231 3.2 4hgx:A, 4hgx:B, 2q02:B, 2q02:C, 2q02:D
16 4q5n:A 220 75 0.0606 0.0909 0.2667 4.2 4q5n:B
17 6ex6:A 634 39 0.0545 0.0284 0.4615 6.8 6ex6:B
18 4q8g:B 353 106 0.0758 0.0708 0.2358 8.3 4q8g:A
19 3bgu:A 106 46 0.0424 0.1321 0.3043 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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