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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SDGDTAMKAFNDTFWDPNAKMFWKDSKREKHQDFWVEAELWELVMDAYQHTSDPALKAELKTQIDDVYDGTVAKYGQDWT
NNPFNDNIMWWAMGSARAYQITGNPRYLEAARDHFDFVYDTQWDEEFANGGIWWLNSDHNTKNACINFPAAQAALYLYDI
TKDEHYLNAATKIFRWGKTMLTDGNGKVFDRIEIEHGAVPDATHYNQGTYIGSAVGLYKATGNAVYLDDAVKAAKFTKNH
LVDSNGVLNYEGPNGDLKGGKTILMRNLAHLQKTLDETGQYPEFSAEFDEWLAFNIEMAWSHQNSDHIVDGNWAGQLLGT
YESWSSAAAVQALNG

The query sequence (length=335) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5agd:B 344 336 1.0000 0.9738 0.9970 0.0 5agd:A, 4boj:A, 4boj:B, 4boj:C, 4d4b:A, 4d4b:B, 4d4c:A, 4d4c:B, 4d4d:A, 4d4d:B, 5m77:A, 5m77:B, 5n0f:A, 5n0f:B, 7nl5:A, 6zbm:A, 6zbw:A, 6zbw:B, 6zbx:A, 6zbx:B
2 6shm:A 339 289 0.2896 0.2861 0.3356 7.43e-31 6y8f:A
3 8wbu:A 391 121 0.0925 0.0793 0.2562 0.065 7d5g:A, 8wbv:A
4 8wbu:A 391 176 0.1134 0.0972 0.2159 0.35 7d5g:A, 8wbv:A
5 8wbu:A 391 28 0.0388 0.0332 0.4643 4.4 7d5g:A, 8wbv:A
6 2d8l:A 363 81 0.0746 0.0689 0.3086 0.086 2gh4:A
7 2d8l:A 363 48 0.0478 0.0441 0.3333 3.0 2gh4:A
8 4g68:A 392 64 0.0567 0.0485 0.2969 0.21 4g68:B
9 8idp:A 446 69 0.0687 0.0516 0.3333 0.32 8idp:C, 8idp:B, 8idp:D, 8idq:A, 8idq:B, 8idq:C, 8idq:D
10 8idr:C 147 40 0.0478 0.1088 0.4000 1.0 8idr:A, 8idr:B, 8idr:D, 8idu:A, 8idu:B, 8idu:C, 8idu:D, 8idu:E, 8idu:F
11 6rxy:Cz 275 92 0.0657 0.0800 0.2391 1.9 6rxz:Cz
12 8ht4:B 390 92 0.0836 0.0718 0.3043 2.0 8ht4:A
13 7vcf:T 763 81 0.0597 0.0262 0.2469 2.6
14 5meh:A 438 192 0.1403 0.1073 0.2448 2.9 4ayp:A, 4ayq:A, 4ayr:A, 8b5m:A, 5ne5:A
15 2q02:A 272 65 0.0627 0.0772 0.3231 3.1 4hgx:A, 4hgx:B, 2q02:B, 2q02:C, 2q02:D
16 6ex6:A 634 39 0.0537 0.0284 0.4615 7.1 6ex6:B
17 3bgu:A 106 46 0.0418 0.1321 0.3043 7.9
18 4q8g:B 353 106 0.0746 0.0708 0.2358 9.5 4q8g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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