Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SDFVRKLYKMLEDPSYHSVVRWSDDGDSFVVLENEKFTKTILPKHFKHSNFASFVRQLNKYDFHKVRHNSPYGRDAWEFK
HPEFRADRKDNLDNIRRK

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5d5x:B 99 99 0.9898 0.9798 0.9798 1.19e-66 5d5w:B, 5d5x:E
2 7dcu:A 101 96 0.4592 0.4455 0.4688 5.39e-25 7dci:A, 7dcu:C
3 5d8k:B 106 101 0.4796 0.4434 0.4653 5.48e-25 5d8l:B, 5d8l:D, 5d8l:F, 5d8l:H, 7dcu:B
4 7dcj:B 110 98 0.4490 0.4000 0.4490 1.63e-24 5d5u:B, 5d5v:B, 5d5v:D, 7dcj:A, 7dcs:A, 7dcs:B, 7dcs:C, 7dcs:D, 7dcs:E, 7dcs:F, 7dct:A, 7dct:B, 7dct:C, 7dct:D, 7dct:E, 7dct:F, 5hdn:A, 5hdn:C
5 1fyk:A 88 80 0.4082 0.4545 0.5000 2.55e-21 3hts:B
6 7uuk:C 276 66 0.2041 0.0725 0.3030 1.9 7jm1:A, 7jm1:C, 7jm1:B, 7jm2:A, 7jm2:C, 7jm2:B, 7uuj:A, 7uuj:C, 7uuj:B, 7uuk:A, 7uuk:B, 7uul:A, 7uul:B, 7uul:D, 7uul:C, 7uul:F, 7uul:E, 7uum:A, 7uun:A, 7uuo:B
7 1pz0:A 311 61 0.2143 0.0675 0.3443 2.4
8 4d0l:E 479 64 0.1837 0.0376 0.2812 2.8 5c4g:E, 4d0l:A, 4d0l:C, 4d0m:A, 4d0m:C, 4d0m:G, 4d0m:I, 4d0m:M, 4d0m:O, 4d0m:Q, 4d0m:S, 4d0m:W, 4d0m:Y, 4d0m:c, 4d0m:g, 5euq:E, 5fbl:A, 5fbq:A, 5fbr:A, 5fbv:A, 5fbw:A, 6gl3:A, 8q6f:A, 8q6g:A, 8q6h:A, 8vof:A, 4wae:A, 4wag:A
9 5k3i:A 661 41 0.1327 0.0197 0.3171 4.3 5k3i:B, 5k3i:C, 5k3i:D, 5k3i:E, 5k3i:F, 5k3i:G, 5k3i:H
10 2y7l:A 312 35 0.1224 0.0385 0.3429 4.3
11 8vz8:A 266 94 0.2041 0.0752 0.2128 5.9 8vz9:A
12 5jb3:O 148 20 0.0816 0.0541 0.4000 6.2 5jbh:O, 6sw9:O, 6swc:O, 6swe:O, 4v4n:BO, 4v6u:AO, 7zag:O, 7zah:O, 7zai:O, 7zhg:O
13 3jsk:A 292 52 0.1837 0.0616 0.3462 7.7 3jsk:B, 3jsk:C, 3jsk:D, 3jsk:E, 3jsk:F, 3jsk:G, 3jsk:H, 3jsk:I, 3jsk:J, 3jsk:K, 3jsk:L, 3jsk:M, 3jsk:N, 3jsk:O, 3jsk:P
14 4f78:A 251 49 0.1633 0.0637 0.3265 8.7 4muq:A
15 3q6k:B 381 20 0.0816 0.0210 0.4000 9.0 3q6k:A
16 4kps:A 324 38 0.1122 0.0340 0.2895 9.3 4kps:E

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218