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BioLiP
>protein
SDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLH
RRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIAR
IRVKDIMLIHALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDGQR
YLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAMVRLLED

The query sequence (length=299) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3c28:A 299 299 1.0000 1.0000 1.0000 0.0
2 1nzb:A 332 322 1.0000 0.9006 0.9286 0.0 3c28:B, 3c29:A, 3c29:B, 3c29:G, 3c29:H, 1crx:B, 1crx:A, 2crx:B, 2crx:A, 3crx:B, 3crx:A, 4crx:A, 4crx:B, 5crx:A, 5crx:B, 1drg:A, 1f44:A, 2hof:A, 2hof:B, 2hoi:A, 2hoi:B, 2hoi:G, 2hoi:H, 1kbu:B, 1kbu:A, 1ma7:A, 1ma7:B, 3mgv:B, 3mgv:A, 3mgv:D, 3mgv:C, 1nzb:B, 1nzb:E, 1nzb:F, 1ouq:B, 1ouq:A, 1ouq:F, 1ouq:E, 1pvp:B, 1pvp:A, 1pvq:B, 1pvq:A, 1pvr:B, 1pvr:A, 1q3u:A, 1q3u:B, 1q3u:E, 1q3u:F, 1q3v:B, 1q3v:A, 1q3v:F, 1q3v:E, 7rhx:A, 7rhx:B, 7rhx:G, 7rhx:H, 7rhy:A, 7rhz:A, 7rhz:B, 5u91:A, 5u91:B, 5u91:E, 5u91:F, 1xns:A, 1xns:B, 1xo0:B, 1xo0:A
3 5bp4:A 1102 37 0.0502 0.0136 0.4054 2.3 5bp2:A, 5bp4:B, 5bp4:C, 5bp4:D, 5bp4:E, 5bp4:F, 5bp4:G, 5bp4:H, 5bp4:J, 5bp4:K, 5bp4:M, 5bp4:N, 5bp4:P
4 5bp4:L 897 37 0.0502 0.0167 0.4054 2.5 5bp4:I
5 5bp4:R 637 37 0.0502 0.0235 0.4054 2.5 5bp4:O, 5bp4:Q
6 1zq1:A 437 134 0.1070 0.0732 0.2388 3.1 1zq1:B
7 1n67:A 332 93 0.0669 0.0602 0.2151 5.2 2vr3:A, 2vr3:B
8 8aaf:e 1527 135 0.1070 0.0210 0.2370 6.4 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
9 2a3v:B 320 118 0.1171 0.1094 0.2966 6.8 2a3v:A, 2a3v:C, 2a3v:D
10 3iuu:A 494 204 0.1639 0.0992 0.2402 7.0
11 3e80:C 747 49 0.0535 0.0214 0.3265 7.1 3e7j:A, 3e7j:B, 3e80:A, 3e80:B, 2fuq:B, 2fuq:A, 2fut:A, 2fut:B
12 5e3x:A 489 49 0.0635 0.0389 0.3878 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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