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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVEDYLLYLQARGLAVKTIQQHLGQLNMLH
RRSGLPRPSDSNAVSDVMRDIRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIAR
IRVKDISRTDGGRMLIHIGRGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEA
THRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRN

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1nzb:A 332 308 0.9900 0.8946 0.9643 0.0 3c28:B, 3c29:A, 3c29:B, 3c29:G, 3c29:H, 1crx:B, 1crx:A, 2crx:B, 2crx:A, 3crx:B, 3crx:A, 4crx:A, 4crx:B, 5crx:A, 5crx:B, 1drg:A, 1f44:A, 2hof:A, 2hof:B, 2hoi:A, 2hoi:B, 2hoi:G, 2hoi:H, 1kbu:B, 1kbu:A, 1ma7:A, 1ma7:B, 3mgv:B, 3mgv:A, 3mgv:D, 3mgv:C, 1nzb:B, 1nzb:E, 1nzb:F, 1ouq:B, 1ouq:A, 1ouq:F, 1ouq:E, 1pvp:B, 1pvp:A, 1pvq:B, 1pvq:A, 1pvr:B, 1pvr:A, 1q3u:A, 1q3u:B, 1q3u:E, 1q3u:F, 1q3v:B, 1q3v:A, 1q3v:F, 1q3v:E, 7rhx:A, 7rhx:B, 7rhx:G, 7rhx:H, 7rhy:A, 7rhz:A, 7rhz:B, 5u91:A, 5u91:B, 5u91:E, 5u91:F, 1xns:A, 1xns:B, 1xo0:B, 1xo0:A
2 3c28:A 299 300 0.9400 0.9431 0.9400 0.0
3 2a3v:B 320 133 0.1200 0.1125 0.2707 2.4 2a3v:A, 2a3v:C, 2a3v:D
4 7mfm:G 1483 60 0.0500 0.0101 0.2500 5.7 7mfm:H, 7mft:G
5 1n67:A 332 93 0.0667 0.0602 0.2151 6.6 2vr3:A, 2vr3:B
6 7acs:A 140 47 0.0400 0.0857 0.2553 9.1 7act:A, 8iv3:D, 8j6x:A, 8j6x:D, 6vyo:A, 6vyo:B, 6vyo:C, 6vyo:D, 6wkp:B, 6wkp:C, 6wkp:D, 7xwz:A, 7xwz:B, 7xx1:A, 7xx1:B, 7xx1:C, 7xx1:D
7 5e3x:A 489 49 0.0633 0.0389 0.3878 9.9
8 3e80:C 747 49 0.0533 0.0214 0.3265 9.9 3e7j:A, 3e7j:B, 3e80:A, 3e80:B, 2fuq:B, 2fuq:A, 2fut:A, 2fut:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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