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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SDESLAEKNKNKLQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRHGLEGRTDRETFKHIMPVVTYEDIQPEINRIANG
DKSQVLCSNPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVMDQFVPGLDKGKGMYFLFIKSESKTPGGLPAR
PVLTSYYKSSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIKFLEKHWPELAR
DIRTGTLSSEITDSSVREAVGEILKPDPKLADFVESECRKTSWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLP
LVCTMYASSECYFGVNLRPLCKPSEVSYTLIPNMAYFEFLPVHRNSGVTSSISLPKALKEQQELVDLVDVKLGQEYELVV
TTYAGLYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIP
GHYVLFWELCLNGNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKMVESGTFDKLMDYAISLGASINQYKTP
RCVKFAPIIELLNSRVVDSYFSPKCPKWSPGHKQW

The query sequence (length=595) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vka:A 595 595 1.0000 1.0000 1.0000 0.0 5kod:A, 5kod:B, 5kod:C, 7vka:B
2 5kod:D 566 589 0.8672 0.9117 0.8761 0.0
3 4b2g:B 572 587 0.6639 0.6906 0.6729 0.0 4b2g:A
4 7dk8:A 558 579 0.6387 0.6810 0.6563 0.0
5 6e1q:A 569 584 0.4958 0.5185 0.5051 0.0 6avh:A, 6avh:C, 6avh:D
6 4epm:A 554 568 0.4723 0.5072 0.4947 0.0 4eq4:A, 4eq4:B, 4eql:A, 4eql:B, 4l39:A, 4l39:B, 6oms:A, 6oms:B
7 6avh:B 541 581 0.4689 0.5157 0.4802 0.0
8 4ewv:B 492 568 0.4185 0.5061 0.4384 1.45e-154 4ewv:A
9 5ech:A 569 573 0.3697 0.3866 0.3839 7.10e-136 5ech:D, 5eci:A, 5eci:D, 5eck:A, 5eck:D, 5ecl:A, 5ecl:D, 5ecm:A, 5ecm:D, 5ecn:A, 5ecn:D, 5eco:A, 5eco:D, 5ecp:A, 5ecp:D, 5ecq:A, 5ecq:D, 5ecr:A, 5ecr:D, 4epl:A, 5gzz:A
10 3vnq:A 497 38 0.0252 0.0302 0.3947 2.3 3vnr:A, 3vns:A
11 6hph:A 418 94 0.0437 0.0622 0.2766 3.1 9fb8:A, 5fhh:A, 5fhh:B, 6hpq:A, 6hpq:B, 6hpu:A, 6hpu:B
12 5xne:A 235 53 0.0235 0.0596 0.2642 3.9 6j3d:A, 6j3d:B, 5xne:B
13 7v1o:A 288 118 0.0504 0.1042 0.2542 4.6 7v1o:B
14 8k1l:A 979 64 0.0319 0.0194 0.2969 7.5
15 8kif:C 286 62 0.0353 0.0734 0.3387 7.8 8kif:B, 8kif:A, 8kif:D
16 4n78:A 1184 48 0.0252 0.0127 0.3125 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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