Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SDEEFKFLATEAKMLITAAERLAGTDPELQEMVALIKKELEQAERTFRNGDKSEAQRQLEFVLTAARAVMNVAAAANAAG
TDPELIEMVLRILKQLKEAIRTFQNGDQEEAETQLRFVLRAAIAVAVVAAALVLAGTDPELQEMVKQILEELKQAIETFA
RGDKEKALTQLLFVAWAAHAVAMIAAAANLAGTDPRLQQQVKEILEKLKEAIETFQKGDEEQAFRQLAEVLAEAALVALR
AALTN

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7uni:B 245 245 1.0000 1.0000 1.0000 2.78e-170 7uni:A, 7uni:C, 7uni:D
2 7ue2:A 304 218 0.2735 0.2204 0.3073 0.40
3 2f1k:A 279 51 0.0694 0.0609 0.3333 0.50 2f1k:B, 2f1k:C, 2f1k:D
4 7q4g:C 231 48 0.0694 0.0736 0.3542 5.0 7q4f:A, 7q4f:B, 7q4f:C, 7q4f:D, 7q4f:E, 7q4g:A, 7q4g:B, 7q4g:D, 7q4g:E, 6xub:A, 6xub:B, 6xub:C, 6xub:D, 6xub:E, 6xuc:A, 6xuc:B, 6xuc:C, 6xuc:D, 6xuc:E
5 4arz:A 291 109 0.1061 0.0893 0.2385 5.1 6jwp:A, 6jwp:F, 3r7w:A, 3r7w:C
6 7khs:C 427 45 0.0571 0.0328 0.3111 9.8
7 8fit:A 229 113 0.1510 0.1616 0.3274 9.8 8fit:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218