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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER
DAYKVKS

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wty:B 97 87 1.0000 0.8969 1.0000 1.36e-58 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
2 4eot:A 92 86 0.8161 0.7717 0.8256 1.64e-44 4eot:B
3 7x5e:E 101 86 0.5747 0.4950 0.5814 1.29e-30 3a5t:A, 3a5t:B, 7x5e:A, 7x5f:A, 7x5f:E, 7x5g:A, 7x5g:E
4 6evq:A 70 27 0.1494 0.1857 0.4815 1.2 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
5 7x5e:B 106 80 0.2184 0.1792 0.2375 1.2 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
6 5vpe:D 67 61 0.2299 0.2985 0.3279 2.1 5vpe:B, 5vpf:B, 5vpf:D
7 4oht:A 455 38 0.1609 0.0308 0.3684 3.1 4oht:B, 4ywu:A, 4ywu:B, 4ywv:A, 4ywv:B
8 4par:C 314 87 0.2299 0.0637 0.2299 5.1 4par:B, 4par:A, 4par:D, 4pba:C, 4pba:B, 4pba:A, 4pba:D
9 7pt6:9 341 34 0.1264 0.0323 0.3235 5.8 7pt6:I, 7pt7:9
10 8gap:A 1012 74 0.2299 0.0198 0.2703 6.1 5c9h:A, 7lma:A, 7lmb:A, 7uy5:A, 7uy6:A
11 6d6v:A 980 74 0.2299 0.0204 0.2703 6.1 5c9h:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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