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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAV
NSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLD

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5jab:A 135 125 1.0000 0.9259 1.0000 2.92e-88 2asf:A, 5jab:B, 5jab:C, 5jab:D
2 8aa2:E 497 66 0.1680 0.0423 0.3182 0.005 8aa2:M, 6r3r:A, 6r3u:A, 7znr:A, 7znr:B, 7zns:A, 7zns:B
3 4tm7:A 243 42 0.1280 0.0658 0.3810 0.50
4 8hku:L13P 140 72 0.2000 0.1786 0.3472 0.97 8hkv:L13P, 8hky:L13P, 8hkz:L13P, 8hl1:L13P, 8hl2:L13P, 8hl3:L13P, 8hl4:L13P, 8hl5:L13P
5 5jv4:A 142 30 0.1040 0.0915 0.4333 1.5 5jv4:D, 5jv4:B, 5jv4:E, 5jv4:C, 5jv4:F
6 1e8u:B 449 50 0.1200 0.0334 0.3000 4.5 7bwu:B, 7bwu:D, 7bwu:A, 7bwu:C, 1e8t:A, 1e8u:A, 1e8v:A, 1e8v:B, 1usr:A, 1usr:B, 1usx:A, 1usx:B, 1usx:C
7 6hyp:A 2272 46 0.1120 0.0062 0.3043 5.4
8 1ddv:A 104 32 0.0800 0.0962 0.3125 6.2
9 5jcs:s 2003 46 0.1120 0.0070 0.3043 6.2
10 7wi7:A 565 34 0.0960 0.0212 0.3529 7.7
11 7suk:LV 362 88 0.1760 0.0608 0.2500 8.5 7ajt:JC, 7d63:RA, 6ke6:RA, 6lqp:RA, 6lqq:RA, 6lqr:RA, 6lqu:RA, 6lqv:RA, 5wlc:LV, 6zqb:JC, 6zqc:JC
12 8omd:A 296 47 0.0960 0.0405 0.2553 8.8 8omd:C, 8omd:B, 8omd:D, 6p2d:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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