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BioLiP
>protein
SDAFKTALCDAYKRSQACSYGDQCRFAHGVHELRLPMNPRGRNHPKYKTVLCDKFSMTGNCKYGTRCQFIHKIVDGNA

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6nzl:A 78 78 1.0000 1.0000 1.0000 4.54e-56
2 1rgo:A 70 71 0.4615 0.5143 0.5070 4.85e-19
3 1rgo:A 70 29 0.1410 0.1571 0.3793 1.0
4 1m9o:A 40 34 0.2308 0.4500 0.5294 1.14e-06
5 1m9o:A 40 31 0.1795 0.3500 0.4516 1.25e-05
6 6pmg:X 35 28 0.2051 0.4571 0.5714 7.66e-04
7 6pmg:X 35 30 0.1410 0.3143 0.3667 2.0
8 7dco:M 176 95 0.3462 0.1534 0.2842 0.004 5gm6:a
9 7dco:M 176 42 0.1538 0.0682 0.2857 0.20 5gm6:a
10 5elk:A 121 63 0.2308 0.1488 0.2857 0.030
11 5elk:A 121 78 0.2692 0.1736 0.2692 3.9
12 6ff4:t 172 43 0.1667 0.0756 0.3023 0.078 8ch6:Z, 6ff7:t, 7qtt:Z
13 6ff4:t 172 25 0.1154 0.0523 0.3600 0.96 8ch6:Z, 6ff7:t, 7qtt:Z
14 7dvq:M 191 43 0.1667 0.0681 0.3023 0.089 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
15 7dvq:M 191 25 0.1154 0.0471 0.3600 0.84 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
16 2fc6:A 50 31 0.1538 0.2400 0.3871 0.10
17 6dnh:C 117 71 0.2821 0.1880 0.3099 0.12 8e3i:C, 8e3q:C, 6fuw:C, 8r8r:C, 2rhk:D, 6urg:C, 6uro:C
18 6dnh:C 117 32 0.1538 0.1026 0.3750 2.5 8e3i:C, 8e3q:C, 6fuw:C, 8r8r:C, 2rhk:D, 6urg:C, 6uro:C
19 8y6o:V 101 20 0.1282 0.0990 0.5000 0.16
20 7tr1:K 346 28 0.1795 0.0405 0.5000 0.68 7lff:A, 7lff:B
21 7tr3:K 418 28 0.1795 0.0335 0.5000 0.81 7tqx:K, 7tqy:K, 7tr0:K
22 2d9m:A 69 27 0.1538 0.1739 0.4444 0.86
23 2d9m:A 69 21 0.1154 0.1304 0.4286 6.8
24 2d9n:A 77 36 0.1667 0.1688 0.3611 1.2 2rhk:C
25 2d9n:A 77 25 0.1538 0.1558 0.4800 1.3 2rhk:C
26 5elh:A 142 36 0.1667 0.0915 0.3611 2.0 5elh:B
27 4y3o:B 461 42 0.1667 0.0282 0.3095 3.0 4cck:A, 4cck:B, 4cck:C, 4cck:D, 4ccm:A, 4ccm:B, 4ccn:A, 4ccn:B, 4cco:A, 4cco:B, 4diq:A, 4diq:B, 4e4h:A, 4e4h:B, 4e4h:C, 4e4h:D, 4y3o:A
28 7xto:B 252 23 0.1538 0.0476 0.5217 4.9 7xto:A, 7xto:C, 7xto:D, 7xto:E, 7xto:F
29 6e20:B 133 45 0.1795 0.1053 0.3111 8.2 6e20:A
30 3sxp:D 314 13 0.1154 0.0287 0.6923 9.0 3sxp:A, 3sxp:B, 3sxp:C, 3sxp:E
31 5br7:A 386 27 0.1410 0.0285 0.4074 9.5 6d2e:A, 6d2g:A, 6d99:A, 6d9a:A, 6d9b:A, 6d9c:A, 6d9d:A, 6d9e:A, 5eqf:A, 5eqf:B, 4xgk:A, 4xgk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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