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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDAARAARAAALLRAAANDLKRNDRAAEADLGLPPGSFGDYVSGRLPITWDLISRAAQAWPLNERDLLPIHNDTPQGLRM
MRVKESEASSRIIERGGGPYYEYRDTAMSRQASYRPEWISMLRVVEDDDPDNPLVEWNKGHLLYQFTYFVGPVNYYFRSG
GRSHCVPMNTGDSVWGLPFAPHSFTARSADEPAYILALTYGGELTGDAQRELATFGRAVTSSLALTPGDHGAMLRSVMAA
RLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTTTEADVRIQPGRTASRWSYPGPDAPAY
RFTQLAGDPLHPHTTSLAVDVLTARPDAPLPPTYQHQYLYVLGEQPVSVRWRYNGEQYDGRLEPGDSAYVIPGIEFSLSA
EKPTELLMLRIGGSATPDVRFALGAMPDGAIGRYIAEDRLWY

The query sequence (length=442) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6b9r:C 446 442 1.0000 0.9910 1.0000 0.0 6b9r:A, 6b9r:D, 6b9r:B
2 6b9t:D 453 441 0.3575 0.3488 0.3583 2.28e-89 6b9s:A, 6b9s:D, 6b9s:C, 6b9s:G, 6b9s:E, 6b9t:A, 6b9t:B, 6b9t:C, 6b9t:E, 6b9t:F, 6b9t:G, 6b9t:H
3 5u57:A 190 147 0.0995 0.2316 0.2993 7.86e-05 5u55:A, 5u55:B, 5u55:C, 5u55:D, 5u57:B, 5u57:C, 5u57:D, 5u58:A, 5u58:B, 5u58:C, 5u5d:A, 5u5d:B, 5u5d:D
4 3gbf:A 415 232 0.1380 0.1470 0.2629 0.010
5 4j1x:C 195 102 0.0543 0.1231 0.2353 0.095 2bnm:A, 2bnm:B, 2bnn:A, 2bnn:B, 2bno:A, 2bno:B, 4j1w:A, 4j1w:B, 4j1w:C, 4j1x:A, 4j1x:B, 3scf:A, 3scf:B, 3scf:C, 3scg:A, 3scg:B, 3scg:C, 3sch:A, 3sch:B, 1zz7:A, 1zz7:B, 1zz8:A, 1zz8:B, 1zz8:C, 1zz9:A, 1zz9:B, 1zz9:C, 1zzb:A, 1zzb:B, 1zzc:A, 1zzc:B
6 8wa0:B 973 80 0.0498 0.0226 0.2750 2.6 8w9z:B
7 8wa1:B 998 80 0.0498 0.0220 0.2750 2.8
8 5crl:B 119 69 0.0520 0.1933 0.3333 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218