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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SCVLSVFQTILKLVIFVAIFGAAISSRLFAVIKFESIIHEFDPWFNYRATKYLVNNSFYKFLNWFDDRTWYPLGRVTGGT
LYPGLMTTSAFIWHALRNWLGLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASAGLLAAGFIAIVPGYISRSVAGSY
DNEAIAITLLMVTFMFWIKAQKTGSIMHATCAALFYFYMVSAWGGYVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAI
GTVASMQIPFVGFLPIRSNDHMAALGVFGLIQIVAFGDFVKGQISTAKFKVIMQPVSWPAFFFDTHFLIWLFPAGVFLLF
LDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDIYLDFKIKPAALLAKLIVSGSFIFYLYLFVFH
STWVTRTAYSSPSVVLPSQTKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAIVGK
AMASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDINKFLWMIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSL
LYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENWMVRIYQLKKDDAQGRTLRDVGELTRSSTKTRRS
IKRPELGLRV

The query sequence (length=650) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ezn:F 650 650 1.0000 1.0000 1.0000 0.0 8agb:A, 8age:A, 6c26:A, 7oci:F
2 8agc:A 697 703 0.9908 0.9240 0.9161 0.0
3 6s7t:A 706 672 0.5292 0.4873 0.5119 0.0
4 6s7o:A 656 652 0.5262 0.5213 0.5245 0.0 6ftg:5, 6fti:5, 6ftj:5, 8pn9:A
5 3waj:A 793 197 0.0831 0.0681 0.2741 4.53e-07
6 3waj:A 793 70 0.0308 0.0252 0.2857 9.8
7 7e9s:A 867 127 0.0646 0.0484 0.3307 6.24e-07 5gmy:A, 3wak:A
8 7e9s:A 867 70 0.0308 0.0231 0.2857 9.7 5gmy:A, 3wak:A
9 3rce:A 683 32 0.0215 0.0205 0.4375 0.18
10 5ogl:A 707 32 0.0215 0.0198 0.4375 0.19 6gxc:A
11 8jhe:A 508 113 0.0477 0.0610 0.2743 0.72 8jhe:B, 8jhe:C, 8jhe:D
12 3vu1:B 490 31 0.0185 0.0245 0.3871 1.0 3vu1:A
13 3aag:A 267 32 0.0200 0.0487 0.4062 2.5
14 1afa:1 154 22 0.0169 0.0714 0.5000 2.5 1afa:2, 1afa:3, 1afb:1, 1afb:2, 1afb:3, 1afd:1, 1afd:2, 1afd:3, 1bch:1, 1bch:2, 1bch:3, 1bcj:1, 1bcj:2, 1bcj:3, 1fif:A, 1fif:B, 1fif:C, 1fih:A, 1fih:B, 1fih:C, 1kmb:1, 1kmb:2, 1kmb:3, 2kmb:1, 2kmb:2, 2kmb:3, 3kmb:1, 3kmb:3, 3kmb:2, 4kmb:1, 4kmb:2, 4kmb:3, 1kwt:A, 1kwt:B, 1kwt:C, 1kwu:A, 1kwu:B, 1kwu:C, 1kwv:A, 1kwv:B, 1kwv:C, 1kww:A, 1kww:B, 1kww:C, 1kwx:A, 1kwx:B, 1kwx:C, 1kwy:A, 1kwy:B, 1kwy:C, 1kwz:A, 1kwz:B, 1kwz:C, 1kx0:A, 1kx0:B, 1kx0:C, 1kx1:C, 1kx1:F, 1kx1:A, 1kx1:B, 1kx1:D, 1kx1:E, 2msb:B, 2msb:A, 1rtm:1, 1rtm:2, 1rtm:3
15 3k3g:A 331 38 0.0215 0.0423 0.3684 2.6
16 5suv:A 126 59 0.0231 0.1190 0.2542 4.4 5suv:B, 5suv:C
17 6y0f:C 722 128 0.0462 0.0416 0.2344 6.4 6y0f:A, 6y0f:B, 6y0f:D
18 2rd5:B 283 105 0.0508 0.1166 0.3143 7.0 2rd5:A, 4usj:A, 4usj:B
19 4ktz:A 160 46 0.0292 0.1187 0.4130 8.2 4ktz:B
20 7cdl:C 573 44 0.0215 0.0244 0.3182 8.6 7cdl:D, 7cdl:A, 7cdl:B, 7cdl:G, 7cdl:H, 7cdl:M, 7cdl:N, 7ce5:A, 7ce5:B, 7ce5:C, 7ce5:D, 7ce5:G, 7ce5:H, 7ce5:M, 7ce5:N, 7ce9:A, 7ce9:B, 7ce9:C, 7ce9:D, 7ce9:G, 7ce9:H, 7ce9:M, 7ce9:N, 7cfx:C, 7cfx:D, 7cfx:A, 7cfx:B, 7cfx:G, 7cfx:H, 7cfx:M, 7cfx:N, 4tqo:B, 4tqo:A, 4tqo:C, 4tqo:D, 4tqo:E, 4tqo:F, 4tqo:G, 4tqo:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218