Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SCSYVVSRPVYSELAFQQQYERRVLKTLLPVLDWLPKYRIKEWLLSDIISGVSTGLVGTLQGMAYALLAAVPVGYGLYSA
FFPILTYFIFGTSRHISVGPFPVVSLMVGSVVLSMAPDEHFIISIDFAARDAARVLIASTLTLLVGIIQLIFGGLQIGFI
VRYLADPLVGGFTTAAAFQVLVSQLKIVLNVSTKNYNGILSIIYTLIEIFQNIGNTNLADFIAGLLTIIICMAVKELNDR
FKHKIPVPIPIEVIVTIIATAISYAVNLEKNYNAGIVKSIPRGFLPPEIPPISLFSEMLTASFSIAVVAYAIAVSVGKVY
AIKYDYTIDGNQEFIAFGISNIFSGFFSCFVATTALSRTAVQESTGGKTQIAGIISAAVVMIAIVALGKLLEPLQKSVLA
AVVIANLKGMFMQVCDVPRLWRQNKTDAVIWVFTCIASIILGLDLGLLAGLMFGFLTVVVRVQFPSWNSLGSIPNTDIYR
STKDYKNIEEPEGVKILRFSSPIFYGNVDGLKKCIKSTVGFDAIRVYNKRLKALPIHSLVLDCGAVSFLDVVGVRSLRMI
VKEFQRIDVHVYFASLQDHVIEKLEQCGFFNDSIRKDIFFLTVHDAILHLRSQ

The query sequence (length=613) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8sgw:C 613 613 1.0000 1.0000 1.0000 0.0 8sgw:D, 8sh3:C, 8sh3:D, 8shc:D, 8shc:C, 8sie:D, 8sie:C, 8uuk:C, 8uuk:D
2 7v75:A 605 604 0.4861 0.4926 0.4934 0.0 7v73:A, 7v74:A
3 7xuh:A 707 560 0.4339 0.3762 0.4750 0.0 7xuh:B, 7xuj:A, 7xuj:B, 7xul:A, 7xul:B
4 7xuh:A 707 83 0.0669 0.0580 0.4940 2.60e-17 7xuh:B, 7xuj:A, 7xuj:B, 7xul:A, 7xul:B
5 7lgu:A 680 663 0.4176 0.3765 0.3861 1.05e-170 7lgu:B, 7lgw:A, 7lgw:B, 7lh2:A, 7lh2:B
6 7ch1:A 640 623 0.3915 0.3750 0.3852 3.13e-148 7ch1:B
7 8tny:B 545 560 0.3132 0.3523 0.3429 1.32e-110 8tny:A
8 7lhv:A 575 590 0.2724 0.2904 0.2831 3.56e-71 7lhv:B
9 5da0:A 467 466 0.1713 0.2248 0.2253 1.23e-11
10 6ki1:B 392 368 0.1321 0.2066 0.2201 1.69e-05 6ki1:A
11 8kd3:D 231 39 0.0228 0.0606 0.3590 2.3 8kd3:F, 8kd4:D, 8kd4:F, 8kd5:D, 8kd5:F, 8kd6:D, 8kd6:F
12 8iht:N 295 78 0.0343 0.0712 0.2692 6.2 8hxx:M, 8hxy:M, 8hxz:M, 8hy0:M, 8ihm:N, 8jho:M, 8jho:O, 8kd7:D, 8tof:D, 8tof:E, 7yi1:L, 7yi1:K, 7yi4:E, 7yi4:C, 7yi5:E, 7yi5:C
13 8a1d:A 533 54 0.0245 0.0281 0.2778 8.3 8a1d:B, 8a1d:C, 8a1d:D, 8a1d:E, 8a1d:F, 8a1d:G, 8a1d:H, 8a1d:I, 8a1d:J, 8a1d:K, 8a1d:L, 8a1d:M, 8a1d:N, 8a1d:O, 8a1d:P, 8a1s:A, 8a1s:B, 8a1s:C, 8a1s:D, 8a1s:E, 8a1s:F, 8a1s:G, 8a1s:H, 8a1s:I, 8a1s:J, 8a1s:K, 8a1s:L, 8a1s:M, 8a1s:N, 8a1s:O, 8a1s:P
14 6zyw:C 4433 77 0.0359 0.0050 0.2857 8.9

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218