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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SCSVPSAQEPLVNGIQVLMENSVTSSAYPNPSILIAMNLAGAYNLKAQKLLTYQLMSSDNNDLTIGHLGLTIMALTSSCR
DPGDKVSILQRQMENWAPSSPNAEASAFYGPSLAILALCQKNSEATLPIAVRFAKTLLANSSPFNVDTGAMATLALTCMY
NKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILNEIKQGKFHN
PMSIAQILPSLKGKTYLDVPQVTCSPDHEVQPTLPSASNITVIYTINNQLRGVELLFNETINVSVKSGSVLLVVLEEAQR
KNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLNEGVADYIPFNHEHITANFTQY

The query sequence (length=385) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3kq4:A 385 385 1.0000 1.0000 1.0000 0.0 3kq4:C, 3kq4:E, 2pmv:A, 2pmv:C
2 4kki:A 398 348 0.3273 0.3166 0.3621 1.04e-52 4kkj:A
3 2bb5:A 409 427 0.3013 0.2836 0.2717 2.07e-24 2bb5:B, 5np4:A, 5nrp:A, 5nsa:A, 7qbd:A, 7qbd:B, 7qbe:A, 7qbe:C, 7qbf:A, 7qbg:C, 4zrp:A, 4zrp:B, 4zrq:A, 4zrq:B
4 2bb6:A 414 385 0.3013 0.2802 0.3013 4.21e-24 2bb6:B, 2bb6:C, 2bb6:D, 2bbc:A, 2v3n:A, 2v3p:A
5 7qbg:A 381 402 0.2935 0.2966 0.2811 9.42e-24
6 8ixt:A 401 286 0.2234 0.2145 0.3007 7.39e-21 8ixu:A
7 8bv5:A 437 76 0.0571 0.0503 0.2895 1.9
8 6wqp:B 354 28 0.0260 0.0282 0.3571 5.0 6wqv:A, 6wqv:B, 6wqv:C, 6wqv:D
9 6egv:A 243 88 0.0571 0.0905 0.2500 6.6 6egx:A, 6eh1:A, 6eiw:A, 5lsf:A, 5oyp:A
10 3hdb:A 417 87 0.0649 0.0600 0.2874 6.9
11 5u8o:B 360 41 0.0338 0.0361 0.3171 7.7 5i0p:C, 5i0p:D, 5u8o:A, 5u8o:C, 5u8o:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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