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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SCRKKCFDASFRGLENCRCDVACKDRGDCCWDFEDTCVESTRIWMCNKFRCGETRLEASLCSCSDDCLQRKDCCADYKSV
CQGETSWLEENCDTAQQSQCPEGFDLPPVILFSMDGFRAEYLYTWDTLMPNINKLKTCGIHSKYMRAMYPTKTFPNHYTI
VTGLYPESHGIIDNNMYDVNLNKNFSLSSKEQNNPAWWHGQPMWLTAMYQGLKAATYFWPGSEVAINGSFPSIYMPYNGS
VPFEERISTLLKWLDLPKAERPRFYTMYFEEPDSSGHAGGPVSARVIKALQVVDHAFGMLMEGLKQRNLHNCVNIILLAD
HGMDQTYCNKMEYMTDYFPRINFFYMYEGPAPRIRAHNIPHDFFSFNSEEIVRNLSCRKPDQHFKPYLTPDLPKRLHYAK
NVRIDKVHLFVDQQWLAVRSKSNTNCGGGNHGYNNEFRSMEAIFLAHGPSFKEKTEVEPFENIEVYNLMCDLLRIQPAPN
NGTHGSLNHLLKVPFYEPSHAEEVSKFSVCGFANPLPTESLDCFCPHLQNSTQLEQVNQMLNLTQEEITATVKVNLPFGR
PRVLQKNVDHCLLYHREYVSGFGKAMRMPMWSSYTVPQLGDTSPLPPTVPDCLRADVRVPPSESQKCSFYLADKNITHGF
LYPPASNRTSDSQYDALITSNLVPMYEEFRKMWDYFHSVLLIKHATERNGVNVVSGPIFDYNYDGHFDAPDEITKHLANT
DVPIPTHYFVVLTSCKNKSHTPENCPGWLDVLPFIIPHRPTNVESCPEGKPEALWVEERFTAHIARVRDVELLTGLDFYQ
DKVQPVSEILQLKTYLPTF

The query sequence (length=819) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6c01:A 819 819 1.0000 1.0000 1.0000 0.0 6c01:B, 6c02:A, 6c02:B
2 6g4g:D 781 819 0.7814 0.8195 0.7814 0.0 6g4g:A
3 6g4g:B 759 819 0.7668 0.8274 0.7668 0.0
4 6g4g:C 742 819 0.7546 0.8329 0.7546 0.0
5 6f2t:B 722 733 0.7289 0.8269 0.8145 0.0 6f2t:A, 6f2v:A, 6f2v:B, 6f2y:A, 6f2y:B, 6f30:A, 6f30:B, 6f33:A, 6f33:B
6 5gz4:A 804 820 0.6422 0.6542 0.6415 0.0 7cba:A, 7cba:B, 5gz5:A
7 6wev:AbA 817 825 0.5507 0.5520 0.5467 0.0 8ghr:A, 8ghr:B, 6wet:AaA, 6wet:BaB, 6weu:AbA, 6weu:BbB, 6wev:BbB, 6wew:AbA, 6wew:BaB, 6wfj:AcA, 6wfj:BcB
8 4b56:A 816 824 0.5299 0.5319 0.5267 0.0 6aek:A, 6ael:A, 4b56:B
9 5s9m:A 809 826 0.4591 0.4648 0.4552 0.0 8c3o:A, 5dlt:A, 9ent:A, 9eu5:A, 5hrt:A, 5ijq:A, 5ijs:A, 5lia:A, 3nkm:A, 3nkp:A, 5s9l:A, 5s9n:A, 6w35:A, 3wav:A, 3wax:A, 2xr9:A, 7z0n:AAA, 7z3k:AAA, 7z3l:AAA
10 3way:A 787 819 0.4530 0.4714 0.4530 0.0 8c3o:B, 8c3p:A, 8c3p:B, 8c4w:A, 8c7r:A, 5dlv:A, 5dlv:B, 5dlw:A, 5inh:A, 5l0b:A, 5l0b:B, 5l0e:A, 5l0e:B, 5l0k:A, 5l0k:B, 6leh:A, 5lqq:A, 5m0d:A, 5m0e:A, 5m0m:A, 5m0s:A, 7mfh:A, 5mhp:A, 3nkn:A, 3nko:A, 3nkq:A, 3nkr:A, 5ohi:A, 5olb:A, 7p0k:AAA, 7p4j:A, 7p4o:A, 3waw:A, 6y5m:A, 4zg7:A
11 4gtw:A 706 738 0.4640 0.5382 0.5149 0.0 4gtw:B, 4gtx:A, 4gtx:B, 4gty:A, 4gty:B, 4gtz:A, 4gtz:B, 6xkd:B
12 2xrg:A 758 819 0.4493 0.4855 0.4493 0.0
13 6xkd:A 679 735 0.4567 0.5508 0.5088 0.0
14 4zg9:B 764 830 0.4493 0.4817 0.4434 0.0 5kxa:A, 5m7m:A, 4zg6:A, 4zg6:B, 4zg9:A, 4zga:A
15 5ven:A 382 384 0.1624 0.3482 0.3464 2.47e-72 5ven:B, 5veo:A
16 5vem:A 383 388 0.1636 0.3499 0.3454 8.66e-71 5vem:B, 5vem:C
17 4lqy:A 379 389 0.1685 0.3641 0.3548 2.23e-68 4lr2:A
18 7mw8:C 385 396 0.1587 0.3377 0.3283 3.08e-64 2gsn:A, 2gsn:B, 2gso:A, 2gso:B, 2gsu:A, 2gsu:B, 7mw8:A, 7mw8:D, 7mw8:B, 7mw8:E, 7mw8:F, 7n1s:A, 7n1s:B, 2rh6:A, 2rh6:B
19 5egh:B 393 401 0.1465 0.3053 0.2993 2.56e-52 5ege:A, 5ege:B, 5ege:C, 5ege:D, 5egh:A
20 5tcd:A 388 394 0.1526 0.3222 0.3173 1.01e-51 5udy:A
21 3szy:A 413 106 0.0354 0.0702 0.2736 0.013 3szz:A, 3t00:A, 3t01:A, 3t02:A
22 5zki:B 304 226 0.0623 0.1678 0.2257 0.013 6iid:A, 6iid:B, 6iid:C, 6iid:D, 7r6t:D, 7r6t:C, 7r6t:L, 7r6v:D, 7r6v:G, 7r6v:E, 7r6v:I, 5t4i:B, 5t4i:A, 5t5c:A, 5t5c:B, 5zki:A, 5zkj:B, 5zkj:A
23 5xwk:A 530 82 0.0281 0.0434 0.2805 0.038 3q3q:A
24 5xwi:A 503 81 0.0281 0.0457 0.2840 0.046
25 5tj3:A 520 95 0.0342 0.0538 0.2947 0.12 5too:A
26 6s21:A 486 38 0.0195 0.0329 0.4211 0.19 6s21:B, 6s21:C
27 6hhm:A 459 69 0.0281 0.0501 0.3333 0.28
28 6pt4:B 473 34 0.0159 0.0275 0.3824 0.53 6pt4:A, 6pt6:B, 6pt6:A, 6pt9:A, 6pt9:B, 6ptk:A, 6ptk:B, 6ptk:C, 6ptk:D
29 6kvs:A 313 120 0.0342 0.0895 0.2333 2.6 6kvs:B
30 1ei6:A 404 269 0.0696 0.1411 0.2119 2.6 1ei6:B, 1ei6:C, 1ei6:D
31 1ow4:A 120 112 0.0379 0.2583 0.2768 5.3 1ow4:B, 1p28:A
32 7stt:A 445 44 0.0195 0.0360 0.3636 7.0 7stu:A, 7stv:A
33 4upi:A 548 73 0.0317 0.0474 0.3562 9.5
34 5dgr:A 573 43 0.0208 0.0297 0.3953 9.6 5dgr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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