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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SCRKKCFDASCRCDVACKDRGDCCWDFEDTCVESTRIWMCNKFRCGETRLEASLCSCSDDCLQRKDCCADYKSVCQGETS
WLEENCDCPEGFDLPPVILFSMDGFRAEYLYTWDTLMPNINKLKTCGIHSKYMRAMYPTKTFPNHYTIVTGLYPESHGII
DNNMYDVNLNKNFSLSSKEQNNPAWWHGQPMWLTAMYQGLKAATYFWPGSEVAINGSFPSIYMPYNGSVPFEERISTLLK
WLDLPKAERPRFYTMYFEEPDSSGHAGGPVSARVIKALQVVDHAFGMLMEGLKQRNLHNCVNIILLADHGMDQTYCNKME
YMTDYFPRINFFYMYEGPAPRIRAHNIPHDFFSFNSEEIVRNLSCRKPDQHFKPYLTPDLPKRLHYAKNVRIDKVHLFVD
QQWLAVRSKSNTNCGGGNHGYNNEFRSMEAIFLAHGPSFKEKTEVEPFENIEVYNLMCDLLRIQPAPNNGTHGSLNHLLK
VPFYEPSHAEEVSKFSVCGFANPLPTESLDCFCPHLQNSTQLEQVNQMLNLTQEEITATVKVNLPFGRPRVLQKNVDHCL
LYHREYVSGFGKAMRMPMWSSYTVPQLGDTSPLPPTVPDCLRADVRVPPSESQKCSFYLADKNITHGFLYPPASNRTSDS
QYDALITSNLVPMYEEFRKMWDYFHSVLLIKHATERNGVNVVSGPIFDYNYDGHFDAPDEITKHLANTDVPIPTHYFVVL
TSCKNKSHTPENCPGWLDVLPFIIPHRPTNVESCPEGKPEALWVEERFTAHIARVRDVELLTGLDFYQDKVQPVSEILQL
KTYLPTF

The query sequence (length=807) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6c01:A 819 819 1.0000 0.9853 0.9853 0.0 6c01:B, 6c02:A, 6c02:B
2 6g4g:D 781 819 0.7856 0.8118 0.7741 0.0 6g4g:A
3 6g4g:B 759 813 0.7732 0.8221 0.7675 0.0
4 6f2t:B 722 728 0.7385 0.8255 0.8187 0.0 6f2t:A, 6f2v:A, 6f2v:B, 6f2y:A, 6f2y:B, 6f30:A, 6f30:B, 6f33:A, 6f33:B
5 6g4g:C 742 819 0.7584 0.8248 0.7473 0.0
6 5gz4:A 804 813 0.6493 0.6517 0.6445 0.0 7cba:A, 7cba:B, 5gz5:A
7 6wev:AbA 817 822 0.5551 0.5483 0.5450 0.0 8ghr:A, 8ghr:B, 6wet:AaA, 6wet:BaB, 6weu:AbA, 6weu:BbB, 6wev:BbB, 6wew:AbA, 6wew:BaB, 6wfj:AcA, 6wfj:BcB
8 4b56:A 816 821 0.5353 0.5294 0.5262 0.0 6aek:A, 6ael:A, 4b56:B
9 5s9m:A 809 826 0.4647 0.4635 0.4540 0.0 8c3o:A, 5dlt:A, 9ent:A, 9eu5:A, 5hrt:A, 5ijq:A, 5ijs:A, 5lia:A, 3nkm:A, 3nkp:A, 5s9l:A, 5s9n:A, 6w35:A, 3wav:A, 3wax:A, 2xr9:A, 7z0n:AAA, 7z3k:AAA, 7z3l:AAA
10 3way:A 787 819 0.4585 0.4701 0.4518 0.0 8c3o:B, 8c3p:A, 8c3p:B, 8c4w:A, 8c7r:A, 5dlv:A, 5dlv:B, 5dlw:A, 5inh:A, 5l0b:A, 5l0b:B, 5l0e:A, 5l0e:B, 5l0k:A, 5l0k:B, 6leh:A, 5lqq:A, 5m0d:A, 5m0e:A, 5m0m:A, 5m0s:A, 7mfh:A, 5mhp:A, 3nkn:A, 3nko:A, 3nkq:A, 3nkr:A, 5ohi:A, 5olb:A, 7p0k:AAA, 7p4j:A, 7p4o:A, 3waw:A, 6y5m:A, 4zg7:A
11 4gtw:A 706 738 0.4709 0.5382 0.5149 0.0 4gtw:B, 4gtx:A, 4gtx:B, 4gty:A, 4gty:B, 4gtz:A, 4gtz:B, 6xkd:B
12 2xrg:A 758 819 0.4548 0.4842 0.4481 0.0
13 6xkd:A 679 735 0.4634 0.5508 0.5088 0.0
14 4zg9:B 764 827 0.4572 0.4830 0.4462 0.0 5kxa:A, 5m7m:A, 4zg6:A, 4zg6:B, 4zg9:A, 4zga:A
15 5ven:A 382 384 0.1648 0.3482 0.3464 2.74e-72 5ven:B, 5veo:A
16 5vem:A 383 388 0.1660 0.3499 0.3454 9.07e-71 5vem:B, 5vem:C
17 4lqy:A 379 389 0.1710 0.3641 0.3548 1.86e-68 4lr2:A
18 7mw8:C 385 396 0.1611 0.3377 0.3283 3.51e-64 2gsn:A, 2gsn:B, 2gso:A, 2gso:B, 2gsu:A, 2gsu:B, 7mw8:A, 7mw8:D, 7mw8:B, 7mw8:E, 7mw8:F, 7n1s:A, 7n1s:B, 2rh6:A, 2rh6:B
19 5egh:B 393 401 0.1487 0.3053 0.2993 2.50e-52 5ege:A, 5ege:B, 5ege:C, 5ege:D, 5egh:A
20 5tcd:A 388 394 0.1549 0.3222 0.3173 7.88e-52 5udy:A
21 3szy:A 413 106 0.0359 0.0702 0.2736 0.012 3szz:A, 3t00:A, 3t01:A, 3t02:A
22 5zki:B 304 226 0.0632 0.1678 0.2257 0.013 6iid:A, 6iid:B, 6iid:C, 6iid:D, 7r6t:D, 7r6t:C, 7r6t:L, 7r6v:D, 7r6v:G, 7r6v:E, 7r6v:I, 5t4i:B, 5t4i:A, 5t5c:A, 5t5c:B, 5zki:A, 5zkj:B, 5zkj:A
23 5xwk:A 530 82 0.0285 0.0434 0.2805 0.036 3q3q:A
24 5xwi:A 503 81 0.0285 0.0457 0.2840 0.042
25 5tj3:A 520 95 0.0347 0.0538 0.2947 0.13 5too:A
26 6s21:A 486 38 0.0198 0.0329 0.4211 0.19 6s21:B, 6s21:C
27 6hhm:A 459 69 0.0285 0.0501 0.3333 0.27
28 6pt4:B 473 34 0.0161 0.0275 0.3824 0.52 6pt4:A, 6pt6:B, 6pt6:A, 6pt9:A, 6pt9:B, 6ptk:A, 6ptk:B, 6ptk:C, 6ptk:D
29 6kvs:A 313 120 0.0347 0.0895 0.2333 2.8 6kvs:B
30 1ei6:A 404 269 0.0706 0.1411 0.2119 3.0 1ei6:B, 1ei6:C, 1ei6:D
31 7stt:A 445 44 0.0198 0.0360 0.3636 6.8 7stu:A, 7stv:A
32 5dgr:A 573 43 0.0211 0.0297 0.3953 9.2 5dgr:B
33 4upi:A 548 73 0.0322 0.0474 0.3562 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218