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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGEESNFRYAWAEKK
LDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVA
EAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMG
TAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAEKW
VDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASG
IIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVIHPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKT

The query sequence (length=479) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5hsq:A 488 484 0.9916 0.9734 0.9814 0.0 8co5:A, 5i5l:A, 6r26:A, 6r27:A, 6r27:B, 6r27:C, 6r27:D
2 4r70:A 498 496 0.3862 0.3715 0.3730 1.27e-112 2ool:A, 2ool:B, 4r70:B
3 6bap:A 505 501 0.4092 0.3881 0.3912 3.43e-108 6baf:A, 6bak:A, 6bao:A, 6bao:B, 6bap:B, 6bap:C, 6bay:A, 6bay:B, 6bay:C, 4rq9:A
4 4r6l:A 473 489 0.4050 0.4101 0.3967 2.57e-104 4e04:A, 4e04:B, 4r6l:B, 4s21:A, 4s21:B
5 8u8z:A 517 496 0.3841 0.3559 0.3710 2.89e-95 8u4x:A, 8u4x:B, 8u62:B, 8u62:A, 8u63:A, 8u63:B, 8u8z:B
6 7jr5:A 482 496 0.4050 0.4025 0.3911 4.03e-95 7jr5:B, 7jri:A, 7jri:B, 6ptq:A, 6ptq:B, 6ptx:A, 6ptx:B, 6pu2:A, 6pu2:B
7 2vea:A 500 486 0.3653 0.3500 0.3601 3.36e-94
8 4gw9:A 628 493 0.3591 0.2739 0.3489 8.42e-91 4gw9:B, 4gw9:C, 4gw9:D, 5oy5:A, 5vik:A, 5viq:A, 5viv:A, 4xtq:A
9 8upk:A 739 492 0.3904 0.2530 0.3801 6.28e-90 8uph:A, 8uph:B, 8upk:B, 8upm:A, 8upm:B
10 8u64:A 487 488 0.3695 0.3634 0.3627 2.84e-89 8u64:B, 8u65:B, 8u65:A
11 6g1y:B 493 499 0.3591 0.3489 0.3447 3.70e-89 6g1y:A, 6g1z:A, 6g1z:B, 6g20:A, 6g20:B
12 6pl0:B 608 499 0.3633 0.2862 0.3487 5.00e-82 5akp:A, 5akp:B, 7l59:A, 6ndo:A, 6ndo:B, 6ndp:A, 6ndp:B, 6pl0:A, 5uyr:A, 5uyr:B
13 7l5a:A 477 495 0.3549 0.3564 0.3434 1.12e-80
14 9eut:A 728 510 0.3695 0.2431 0.3471 1.76e-71 3c2w:A, 3c2w:B, 3c2w:C, 3c2w:D, 3c2w:E, 3c2w:F, 3c2w:G, 3c2w:H, 9eut:B, 9euy:A, 9euy:B, 3g6o:A, 3g6o:B, 3ibr:A, 3ibr:B, 3nhq:A, 3nhq:B, 3nhq:C, 3nhq:D, 3nhq:E, 3nhq:F, 3nhq:G, 3nhq:H, 3nop:C, 3not:C, 3nou:C
15 8avw:B 579 486 0.3528 0.2919 0.3477 5.43e-71 8avw:A
16 6fht:B 735 484 0.3570 0.2327 0.3533 1.86e-70 5ajg:A, 8avv:A, 8avv:B, 8avx:A, 8avx:B, 8bor:A, 8bor:B, 8bor:C, 8bor:D, 8c3i:B, 8c3i:A, 5c5k:A, 5c5k:B, 5c5k:C, 5c5k:D, 4cqh:A, 6fht:A, 6ftd:A, 6ftd:B, 4ijg:A, 5k5b:A, 5l8m:A, 5lbr:A, 5mg0:A, 5mg1:A, 5nfx:A, 5nm3:A, 5nm3:B, 5nm3:C, 5nm3:D, 5nwn:A, 5nwn:B, 5nwn:C, 5nwn:D, 4o01:A, 4o01:B, 4o01:C, 4o01:D, 4o0p:A, 4o0p:B, 4o8g:A, 2o9b:A, 2o9c:A, 4q0h:A, 4q0i:A, 4q0j:A, 3s7n:A, 3s7o:A, 3s7p:A, 3s7q:A, 8sgk:A, 8sgk:B, 6t3l:B, 6t3l:A, 6t3u:B, 6t3u:A, 4y3i:A, 4y5f:A, 4z1w:A, 7z9d:A, 7z9e:A, 4zrr:A, 1ztu:A
17 5llw:B 673 499 0.3152 0.2244 0.3026 2.99e-62 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A
18 6et7:A 646 485 0.3069 0.2276 0.3031 5.47e-59 6et7:B
19 6tl4:A 496 487 0.2923 0.2823 0.2875 1.18e-51
20 8iff:A 868 487 0.3006 0.1659 0.2957 1.18e-51 8f5z:B, 8f5z:A, 8iff:B, 8isj:A, 8isj:B
21 7rzw:B 864 484 0.2777 0.1539 0.2748 1.49e-48 7rzw:A
22 4our:A 448 485 0.2860 0.3058 0.2825 2.11e-48 4our:B
23 8isk:B 848 496 0.2985 0.1686 0.2883 1.38e-46 8isk:A
24 6tby:AAA 320 302 0.1900 0.2844 0.3013 3.98e-32 6tc5:AAA
25 6tc7:BBB 319 318 0.2004 0.3009 0.3019 6.76e-29 6tc7:AAA
26 6ozb:C 193 181 0.1378 0.3420 0.3646 3.52e-26 6ozb:A, 6ozb:B
27 2k2n:A 172 171 0.1294 0.3605 0.3626 5.15e-25 2lb9:A
28 4bwi:A 381 248 0.1503 0.1890 0.2903 4.82e-20 4bwi:B
29 5m85:A 159 135 0.0689 0.2075 0.2444 0.013 5m82:A
30 3w2z:A 178 139 0.0731 0.1966 0.2518 0.023 5zoh:A
31 4fof:A 168 123 0.0605 0.1726 0.2358 0.18 4glq:A, 2m7u:A, 2m7v:A, 6p58:A, 6p58:B, 6pru:A, 6pru:B, 6pry:A, 6pry:B, 6upp:A, 6upp:B, 3vv4:A, 3vv4:B
32 5okn:D 433 74 0.0438 0.0485 0.2838 0.20 4a9c:B, 5okn:C, 5okn:E, 5okn:F, 5okn:H, 6squ:B
33 6ob8:A 307 155 0.0731 0.1140 0.2258 0.49 6oap:A, 6oap:B, 6oaq:A, 6oaq:B, 6ob8:B
34 5okn:G 402 72 0.0334 0.0398 0.2222 0.51 6squ:A
35 6bhn:A 156 139 0.0668 0.2051 0.2302 0.56 6bho:A
36 6jdc:A 269 118 0.0668 0.1190 0.2712 3.9
37 6oa9:D 489 31 0.0355 0.0348 0.5484 5.3 6oaa:E, 6oab:E
38 1zfj:A 476 47 0.0292 0.0294 0.2979 5.4
39 6opc:B 741 31 0.0355 0.0229 0.5484 5.6 8dar:A, 8dar:B, 8dar:C, 8dar:D, 8dar:E, 8dar:F, 8das:A, 8das:B, 8das:C, 8das:D, 8das:E, 8das:F, 8dat:A, 8dat:B, 8dat:C, 8dat:D, 8dat:E, 8dat:F, 8dau:A, 8dau:B, 8dau:C, 8dau:D, 8dau:E, 8dau:F, 8dav:A, 8dav:B, 8dav:C, 8dav:D, 8dav:E, 8dav:F, 8daw:A, 8daw:B, 8daw:C, 8daw:D, 8daw:E, 8daw:F, 6oa9:A, 6oa9:B, 6oa9:C, 6oa9:E, 6oa9:F, 6oaa:B, 6oaa:C, 6oaa:D, 6oab:D, 6oab:B, 6oab:C, 6oab:A, 6omb:A, 6omb:B, 6omb:C, 6omb:D, 6omb:E, 6opc:A, 6opc:C, 6opc:D, 6opc:E
40 2or1:L 63 63 0.0376 0.2857 0.2857 7.3 2or1:R, 1per:L, 1per:R, 1rpe:L, 1rpe:R
41 2qhs:A 210 49 0.0376 0.0857 0.3673 7.6 2qhu:A, 2qhv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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