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BioLiP
>protein
SAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKRRRYFENKQEEKKRKHREAAKRNSRRRRG

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mmj:u 65 65 1.0000 1.0000 1.0000 2.16e-40 6eri:BU, 5mmm:u, 5x8p:u, 5x8r:u
2 4v61:AU 53 53 0.6923 0.8491 0.8491 5.05e-26
3 8fmw:U 69 38 0.2923 0.2754 0.5000 8.47e-07
4 5myj:AU 56 53 0.3231 0.3750 0.3962 3.89e-06
5 7ac7:z 70 56 0.3077 0.2857 0.3571 2.14e-05 4a2i:U, 8a3l:U, 7abz:z, 7acj:z, 7acr:z, 4adv:U, 5afi:u, 7afo:U, 8akn:V, 8am9:V, 6awb:X, 6awc:X, 6awd:X, 9ax7:U, 9ax8:u, 8aye:U, 8b0x:U, 7b5k:u, 8b7y:5, 8bf7:y, 8bge:y, 8bgh:y, 8bh4:y, 8bhj:y, 8bhl:y, 8bhn:y, 8bhp:y, 8bil:y, 8bim:y, 7bod:U, 7boe:U, 7boi:U, 6bu8:U, 6c4i:u, 8cai:U, 8cep:U, 8cgj:U, 8cgr:U, 8cgu:U, 9cg5:U, 9cg6:U, 9cg7:U, 7cpj:u, 7d6z:1, 7d80:V, 6dnc:HB, 8eiu:U, 8ekc:u, 8emm:U, 6enf:u, 6enj:u, 6enu:u, 9fbv:U, 8fiz:AU, 8fto:U, 8fzd:u, 8fze:u, 8fzf:u, 8fzg:u, 8fzh:u, 8fzi:u, 8fzj:u, 8g2u:t, 8g31:t, 8g34:t, 8g38:t, 8g6w:U, 8g7p:u, 8g7q:u, 8g7r:u, 8g7s:u, 6gwt:u, 6gxm:u, 6gxn:u, 6gxo:u, 6gxp:u, 6h4n:u, 5h5u:2, 6h58:u, 6h58:uu, 6hrm:z, 8hsp:U, 8htz:U, 8hu1:U, 6i7v:AU, 6i7v:BU, 8ifb:U, 8ifc:U, 5iqr:z, 5it8:AU, 5it8:BU, 5j5b:AU, 5j5b:BU, 5j7l:AU, 5j7l:BU, 5j88:AU, 5j88:BU, 5j8a:AU, 5j8a:BU, 3j9y:u, 3j9z:SU, 5j91:AU, 5j91:BU, 3ja1:SU, 3jbu:U, 3jbv:U, 3jcd:u, 3jce:u, 3jcj:2, 3jcn:w, 5jc9:AU, 5jc9:BU, 7jss:Z, 7jsw:Z, 7jsz:Z, 8jsg:2, 8jsh:2, 5jte:AU, 7jt1:Z, 7jt2:Z, 7jt3:Z, 5ju8:AU, 7k00:U, 8k4e:X, 7k50:Z, 7k51:Z, 7k52:Z, 7k53:Z, 7k54:Z, 7k55:Z, 5kcr:1u, 5kcs:1u, 5kps:26, 5kpv:25, 5kpw:25, 5kpx:25, 5l3p:u, 6lkq:T, 7lv0:Z, 5lza:u, 5lzb:u, 5lzc:u, 5lzd:u, 5lze:u, 5lzf:u, 7m5d:z, 5mdv:z, 5mdw:z, 5mdy:z, 5mdz:z, 5me0:U, 5me1:U, 5mgp:u, 5my1:U, 7n1p:SU, 7n2c:SU, 7n2u:SU, 7n2v:SU, 7n30:SU, 7n31:SU, 7nar:U, 7nas:U, 7nat:U, 7nbu:U, 5np6:X, 7nso:u, 7nsp:u, 7nsq:u, 5nwy:K, 7nwt:z, 7nww:y, 7o19:AU, 7o1a:AU, 7o1c:AU, 5o2r:u, 7o5h:U, 6o7k:2, 6o9j:u, 6o9k:u, 6ofx:Z, 6og7:Z, 6ogf:Z, 6ogg:Z, 6ogi:Z, 7oif:y, 7oig:y, 7oii:y, 7oiz:U, 7oj0:U, 6om6:z, 6ore:z, 6orl:z, 6osk:z, 6osq:z, 6ost:z, 6ot3:z, 7ot5:y, 7otc:u, 6ouo:z, 8p16:z, 8p17:z, 8p18:z, 7p3k:U, 8peg:U, 8phj:U, 7pjs:u, 7pjt:u, 7pju:u, 7pjv:u, 7pjw:u, 7pjx:u, 7pjy:u, 7pjz:u, 8pkl:U, 8pva:U, 7q4k:AU, 8q4f:U, 6q97:z, 6q98:z, 6q9a:z, 8qbt:3, 7qg8:v, 7qgh:s, 7qgn:v, 7qgr:s, 8qk7:z, 8qoa:U, 8r3v:U1, 8r3v:U2, 8r6c:U, 8r8m:U, 8rcl:U1, 8rcl:U2, 8rcm:U1, 8rcm:U2, 8rcs:U1, 8rcs:U2, 8rct:U1, 8rct:U2, 7s1g:3, 7s1h:3, 7s1i:3, 7s1j:3, 7s1k:3, 7sa4:z, 7ss9:Z, 7ssd:Z, 7ssl:Z, 7ssn:Z, 7sso:Z, 7ssw:Z, 7st2:Z, 7st6:Z, 7st7:Z, 8syl:u, 6szs:u, 8t5d:t, 6tbv:S211, 6tc3:S211, 7tos:S21, 4u1u:AU, 4u1u:CU, 4u1v:AU, 4u1v:CU, 4u20:AU, 4u20:CU, 4u24:AU, 4u24:CU, 4u25:AU, 4u25:CU, 4u26:AU, 4u26:CU, 4u27:AU, 4u27:CU, 5u4i:u, 5u9f:U, 5u9g:U, 7ug7:SU, 7uph:H, 8upo:F, 8upr:F, 8uql:F, 8uqm:F, 8uqp:F, 8ur0:F, 8urh:F, 8uri:F, 8urx:F, 8ury:F, 5uyk:U, 5uyl:U, 5uym:U, 5uyn:U, 5uyp:U, 5uyq:U, 4v4h:AU, 4v4h:CU, 4v4q:AU, 4v4q:CU, 4v50:AU, 4v50:CU, 4v52:AU, 4v52:CU, 4v53:AU, 4v53:CU, 4v54:AU, 4v54:CU, 4v55:AU, 4v55:CU, 4v56:AU, 4v56:CU, 4v57:AU, 4v57:CU, 4v5b:BU, 4v5b:DU, 4v5h:AU, 4v5y:AU, 4v5y:CU, 4v64:AU, 4v64:CU, 4v65:AQ, 4v66:AQ, 4v69:AU, 4v6c:AU, 4v6c:CU, 4v6d:AU, 4v6d:CU, 4v6e:AU, 4v6e:CU, 4v6k:BY, 4v6l:AY, 4v6m:AU, 4v6n:BX, 4v6o:AX, 4v6p:AX, 4v6q:AX, 4v6r:AX, 4v6s:BW, 4v6t:AU, 4v6v:AU, 4v6y:AU, 4v6z:AU, 4v70:AU, 4v71:AU, 4v72:AU, 4v73:AU, 4v74:AU, 4v75:AU, 4v76:AU, 4v77:AU, 4v78:AU, 4v79:AU, 4v7a:AU, 4v7b:AU, 4v7c:AU, 4v7d:BU, 4v7i:BU, 4v7s:AU, 4v7s:CU, 4v7t:AU, 4v7t:CU, 4v7u:AU, 4v7u:CU, 4v7v:AU, 4v7v:CU, 4v85:AU, 4v89:AU, 4v9c:AU, 4v9c:CU, 4v9d:AU, 4v9d:BU, 4v9o:BU, 4v9o:DU, 4v9o:FU, 4v9o:HU, 4v9p:BU, 4v9p:DU, 4v9p:FU, 4v9p:HU, 8vs9:S21, 8vsa:S21, 6vu3:F, 6vwl:t, 6vwm:t, 6vwn:t, 6vyq:F, 6vyr:F, 6vys:F, 6vyt:F, 6vyu:F, 6vyw:F, 6vyx:F, 6vyy:F, 6vyz:F, 6vz2:F, 6vz3:F, 6vz5:F, 6vz7:F, 6vzj:F, 5wdt:u, 6wd0:Z, 6wd1:Z, 6wd2:Z, 6wd3:Z, 6wd4:Z, 6wd5:Z, 6wd6:Z, 6wd7:Z, 6wd8:Z, 6wd9:Z, 6wda:Z, 6wdb:Z, 6wdc:Z, 6wdd:Z, 6wde:Z, 6wdf:Z, 6wdg:Z, 6wdh:Z, 6wdi:Z, 6wdj:Z, 6wdk:Z, 6wdl:Z, 6wdm:Z, 5we4:u, 5we6:u, 4wf1:AU, 4wf1:CU, 5wf0:u, 5wfk:u, 5wfs:u, 6wnv:Z, 6wnw:Z, 4woi:AU, 4woi:DU, 4www:QU, 4www:XU, 6x6t:F, 6x7f:F, 6x7k:F, 6x9q:F, 6xdq:F, 6xdr:F, 6xe0:U, 6xgf:F, 6xii:F, 6xij:F, 6xza:U1, 6xzb:U1, 6y69:u, 7y7c:U, 7y7d:U, 7y7e:U, 7y7f:U, 7y7g:U, 7y7h:U, 4ybb:AU, 4ybb:BU, 2ykr:U, 6ysr:u, 6yss:u, 6yst:u, 6ysu:u, 6ztj:AU, 6ztl:AU, 6ztm:AU, 6ztn:AU, 6zto:AU, 6ztp:AU, 7zta:S211, 6zu1:AU
6 7m4u:u 63 57 0.2769 0.2857 0.3158 1.37e-04 7m4w:u, 7m4x:u, 7m4y:u, 7m4z:u, 7ryf:u, 7ryg:u, 7ryh:u, 7uvv:u, 7uvw:u, 7uvx:u, 7uvy:u, 7uvz:u, 7uw1:u, 6ypu:v, 6yt9:v
7 7qv1:b 57 53 0.2769 0.3158 0.3396 2.94e-04 6fxc:Au, 6fxc:Bu, 5nd8:u, 5nd9:u, 5ngm:Au, 7qv3:b, 6s0x:u, 6s13:u
8 8rd8:NV 57 52 0.2769 0.3158 0.3462 3.94e-04 8rdv:NV, 8rdw:NV
9 1aye:A 401 27 0.2615 0.0424 0.6296 0.90 1dtd:A
10 5van:A 861 45 0.1846 0.0139 0.2667 1.2 6nfj:A, 6nfj:D, 5vaq:A
11 8cd1:u 62 44 0.2615 0.2742 0.3864 2.0 6spc:u, 6spe:u, 6spf:u, 6spg:u, 7unr:u, 7unu:u, 7unv:u, 7unw:u
12 6hiv:DA 1557 51 0.2769 0.0116 0.3529 2.8 6hiw:DA, 7pub:DA
13 6hiy:DA 1426 51 0.2769 0.0126 0.3529 3.0
14 5cd1:B 321 31 0.2154 0.0436 0.4516 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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