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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SAYACDIDATRYDGFNATIYEFQPGDGRLTRDPVFMSTGYLNRTQLHSITGVTDPGFSIYTPGVPTTTLYGIPNVNWENL
LLELKGYFRAEVSGDYGLSLRNIDDSAILFFGKETAFQCCNENSISNEASTDYSLFTIFRQEGDETTNLDSFTYTQYLEA
GKYYPVRTFFVNIERHAVFNFTMTLPDGTELTDFHNYIYQFGALDEEQCQA

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6hos:A 213 211 1.0000 0.9906 1.0000 1.60e-158 6hos:B
2 5a3l:A 209 211 0.5877 0.5933 0.5877 4.96e-85 5a3l:B, 5a3l:C, 5a3l:D, 5a3m:A, 5a3m:B, 5a3m:C, 5a3m:D
3 4gq7:A 220 214 0.2986 0.2864 0.2944 1.30e-23 4lhk:A, 4lhk:B
4 2xjp:A 258 231 0.3081 0.2519 0.2814 1.68e-22 4lhn:A, 2xjr:A, 2xjs:A, 2xjt:A, 2xju:A, 2xjv:A
5 4coy:A 232 179 0.2370 0.2155 0.2793 8.11e-12 4cou:A, 4cov:A, 4cow:A, 4coz:A
6 6y9j:A 231 190 0.2654 0.2424 0.2947 1.03e-11 4a3x:A, 4af9:A, 4afa:A, 4afb:A, 4afc:A, 4asl:A, 4d3w:A
7 6y98:A 225 136 0.2038 0.1911 0.3162 9.45e-11 4cp0:A, 4cp1:A, 4cp2:A
8 2fge:A 979 101 0.1327 0.0286 0.2772 0.17 2fge:B
9 5g09:D 473 56 0.0806 0.0359 0.3036 5.9 5g09:A, 5g09:B, 5g09:C, 5g0a:A, 5g0a:B, 5g0a:C, 5g0a:D, 5g2p:A, 5g2p:B, 5g2p:C, 5g2p:D, 5g2q:A, 5g2q:B, 5g2q:C, 5g2q:D, 5g2q:E, 5g2q:F, 5g2q:G, 5g2q:H, 5g2q:I, 5g2q:J, 5g2q:K, 5g2q:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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