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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKL
RISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESA
SLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE
TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIR
ISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALE
DQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRD

The query sequence (length=474) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a8u:A 474 474 1.0000 1.0000 1.0000 0.0
2 1g8x:A 1009 239 0.1456 0.0684 0.2887 2.13e-21 1g8x:B
3 1g8x:A 1009 122 0.0633 0.0297 0.2459 0.092 1g8x:B
4 5i4e:A 959 205 0.1266 0.0626 0.2927 5.56e-18
5 5i4e:A 959 121 0.0612 0.0302 0.2397 0.22
6 6sl2:A 619 115 0.0570 0.0436 0.2348 7.81e-04 5nl7:A, 6sl3:A
7 4q6w:A 376 74 0.0506 0.0638 0.3243 0.11 4q6w:B
8 3j5s:D 554 95 0.0675 0.0578 0.3368 1.1
9 7wm6:A 240 32 0.0338 0.0667 0.5000 4.0 7wm6:C, 7wm6:D
10 4wpc:B 288 184 0.0886 0.1458 0.2283 4.7 4wpc:A
11 3uul:A 115 99 0.0485 0.2000 0.2323 7.5
12 2r02:A 697 36 0.0338 0.0230 0.4444 8.3 3c3o:A, 3c3q:A, 3c3r:A, 2r03:A, 2r05:A, 5v3r:A, 5wa1:A, 2xs1:A, 2xs8:A
13 7jh6:A 174 76 0.0464 0.1264 0.2895 8.5 7jh6:B, 7jh6:C, 7jh6:D
14 7pt4:B 584 89 0.0443 0.0360 0.2360 9.7 7pt1:A, 7pt1:B, 7pt2:A, 7pt2:B, 7pt3:A, 7pt3:B, 7pt4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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