Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SAVGEKMLDDFEGVLNWGSYSGEGAKVSTKIVSGKTGNGMEVSYTGTTDGYWGTVYSLPDGDWSKWLKISFDIKSVGSAN
EIRFMIAEKSINGVGDGEHWVYSITPDSSWKTIEIPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFVVD
NIKLIGALEHHHHHH

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6r3m:A 175 175 1.0000 1.0000 1.0000 1.87e-128 2lro:A, 2lrp:A, 6r31:A, 1v0a:A
2 6rqa:A 322 46 0.0857 0.0466 0.3261 0.24 6rqa:B
3 6dcq:M 135 60 0.1029 0.1333 0.3000 0.54 6dcq:H, 5fuu:M, 5fuu:H, 6mar:H, 6mar:M, 6olp:G, 6olp:H, 6vpx:P
4 6fxj:A 251 59 0.0971 0.0677 0.2881 1.7 6fxj:B, 6fxj:C, 6fxj:D, 6fxj:E, 6fxq:A, 6fxq:B, 6fxq:C, 6fxq:D, 6fxq:E, 5loq:A, 5loq:B, 5loq:C, 5loq:D, 5loq:E
5 6z2w:E 2325 26 0.0629 0.0047 0.4231 2.4 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
6 8acs:A 598 63 0.1086 0.0318 0.3016 2.5 8acs:B, 8acs:C, 8acs:D
7 5yc1:F 164 38 0.0571 0.0610 0.2632 3.8 5yc1:D, 5yc1:A
8 8qoy:A 1036 28 0.0686 0.0116 0.4286 4.0
9 4z6k:A 345 73 0.1086 0.0551 0.2603 6.4 4z6k:B, 4z6k:C, 4z6k:D
10 3axx:B 379 60 0.1086 0.0501 0.3167 6.4 3axx:A, 3axx:C, 3qhm:A, 3qhm:B, 3qhm:C, 3qhn:A, 3qhn:B, 3qhn:C, 3qho:A, 3qho:B, 3qho:C, 3vvg:A, 3vvg:C, 2zum:A, 2zun:A, 2zun:B, 2zun:C
11 7oex:A 192 32 0.0743 0.0677 0.4062 6.4 7oex:B
12 8pcx:A 232 50 0.1029 0.0776 0.3600 7.0 8bjo:A, 8bxz:A, 8p6o:A, 8pc3:A, 8pc8:A, 8pdt:A, 8ped:A, 8qli:A, 8r43:A, 8rbn:A
13 7tl7:A 531 19 0.0629 0.0207 0.5789 7.3 5kgl:A, 5kgl:B, 5kgm:A, 5kgm:B, 5kgn:A, 5kgn:B, 7knf:A, 7knf:B, 7kng:A, 7kng:B, 7tl7:B, 7tl7:C, 7tl7:D
14 8cg6:A 1208 27 0.0571 0.0083 0.3704 7.5
15 4yu6:A 754 88 0.1257 0.0292 0.2500 7.5 4yu5:A, 4yu5:B, 4yu6:B
16 5d84:A 318 57 0.1029 0.0566 0.3158 7.8 5d85:A, 5d86:A, 5d87:A
17 8cg5:A 1282 27 0.0571 0.0078 0.3704 8.1 6fij:B
18 8qcf:K 915 53 0.0914 0.0175 0.3019 8.3

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218