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BioLiP
>protein
SAVGEKMLDDFEGVLNWGSYSGEGAKVSTKIVSGKTGNGMEVSYTGTTDGYWGTVYSLPDGDWSKWLKISFDIKSVANEI
RFMIAEKSINGVGDGEHWVYSITPDSSWKTIEIPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFVVDNI
KLIGALEHHH

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6r3m:A 175 172 1.0000 0.9714 0.9884 2.23e-122 2lro:A, 2lrp:A, 6r31:A, 1v0a:A
2 1rsg:A 481 80 0.1294 0.0457 0.2750 0.005
3 4gdp:B 502 80 0.1294 0.0438 0.2750 0.005 3bi2:A, 3bi2:B, 3bi4:A, 3bi4:B, 3bi5:A, 3bi5:B, 3bnm:B, 3bnm:A, 3bnu:B, 3bnu:A, 3cn8:B, 3cn8:A, 3cnd:B, 3cnd:A, 3cnp:B, 3cnp:A, 3cns:A, 3cns:B, 3cnt:B, 3cnt:A, 4ech:A, 4ech:B, 4gdp:A, 4gdp:C, 4gdp:D, 1rsg:B, 1xpq:A, 1xpq:B, 1xpq:C, 1xpq:D, 1yy5:A, 1yy5:B, 1z6l:A, 1z6l:B
4 6rqa:A 322 46 0.0882 0.0466 0.3261 0.25 6rqa:B
5 6dcq:M 135 60 0.1059 0.1333 0.3000 0.54 6dcq:H, 5fuu:M, 5fuu:H, 6mar:H, 6mar:M, 6olp:G, 6olp:H, 6vpx:P
6 6fxj:A 251 58 0.1000 0.0677 0.2931 0.59 6fxj:B, 6fxj:C, 6fxj:D, 6fxj:E, 6fxq:A, 6fxq:B, 6fxq:C, 6fxq:D, 6fxq:E, 5loq:A, 5loq:B, 5loq:C, 5loq:D, 5loq:E
7 6se9:A 989 93 0.1412 0.0243 0.2581 1.5 6sea:A, 6seb:A, 6sec:A, 6sed:A, 6zjq:A, 6zjr:A, 6zjs:A, 6zjt:A, 6zju:A, 6zjw:A, 6zjx:A
8 6z2w:E 2325 26 0.0647 0.0047 0.4231 2.4 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
9 5e7g:A 446 56 0.1000 0.0381 0.3036 2.9
10 5yc1:F 164 38 0.0588 0.0610 0.2632 3.0 5yc1:D, 5yc1:A
11 7tl7:A 531 19 0.0647 0.0207 0.5789 6.0 5kgl:A, 5kgl:B, 5kgm:A, 5kgm:B, 5kgn:A, 5kgn:B, 7knf:A, 7knf:B, 7kng:A, 7kng:B, 7tl7:B, 7tl7:C, 7tl7:D
12 3axx:B 379 60 0.1118 0.0501 0.3167 6.5 3axx:A, 3axx:C, 3qhm:A, 3qhm:B, 3qhm:C, 3qhn:A, 3qhn:B, 3qhn:C, 3qho:A, 3qho:B, 3qho:C, 3vvg:A, 3vvg:C, 2zum:A, 2zun:A, 2zun:B, 2zun:C
13 8cg6:A 1208 27 0.0588 0.0083 0.3704 7.1
14 8cg5:A 1282 27 0.0588 0.0078 0.3704 7.2 6fij:B
15 8pro:A 80 66 0.1235 0.2625 0.3182 8.6 8prm:B, 8prm:C, 8prm:D
16 5d84:A 318 57 0.1059 0.0566 0.3158 9.6 5d85:A, 5d86:A, 5d87:A
17 8qcf:K 915 41 0.0706 0.0131 0.2927 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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