Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SASVIFSKYINNNNNKLIPFKIKNSDLGRTRYFPPISKEWKNSIYVFNHNNLKNLPLFDININSLIKDYFNLQFKDKILF
KKKRLSKVKVVSLNKIYASKAEIKHTNTKAILTVYTFNREKISLYKKIKKLKKSFYFVFDKIISFSERVILSGVPVLPWI
TESHVNIWRKIIIASLYKELILLRKYKLRLDLNKYKFEEKLLYRLNNLIMKYYNKKVEFNIVNMRSFLLNSDILTKILAL
KLKNRNARVIKIMDVILNKANLPKINRVQEKASLIKSVDWNLLENKFKNLNLSFILNDASYAERNNLSELLNKLYYNVLL
VSQKGVWALRSPAQPKVSSFAKAKKYAKIYQIIFNSINYKNMGGLRLEIKGRLTKRYRADRSLFKVKWKGGLKNLDSSYK
GLSSVNMRGYAKPNVEYSIFTSKRRIGAFAVKGWVSGK

The query sequence (length=438) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yw5:CC 438 438 1.0000 1.0000 1.0000 0.0 6ywe:CC, 6ywx:CC, 6ywy:CC
2 8ihn:K 598 145 0.0799 0.0585 0.2414 0.21 8iht:K
3 8hxx:K 549 145 0.0799 0.0638 0.2414 0.27 8hxy:K, 8hy0:K, 8jho:K, 8kd3:B, 8kd4:B, 8kd5:B, 8kd6:B, 8tof:A
4 1ep1:B 261 74 0.0479 0.0805 0.2838 0.28 1ep2:B, 1ep3:B
5 7yi2:A 506 145 0.0799 0.0692 0.2414 0.43 7yi5:A
6 2enx:A 310 93 0.0525 0.0742 0.2473 0.69 2enx:B
7 7agj:A 731 27 0.0297 0.0178 0.4815 5.4 7agj:B
8 5ksw:B 262 74 0.0434 0.0725 0.2568 5.4 5ksw:D, 5ue9:B, 5ue9:D
9 8phi:F 453 140 0.0753 0.0728 0.2357 7.1 9bjm:A, 5ea3:F, 5ea4:F, 5ea5:F, 5ea6:F, 6eag:F, 6eah:C, 6eak:F, 8kg5:A, 8kg5:C, 8kg5:B, 3kpe:A, 7kqd:F, 5kww:F, 6ntx:B, 6vkc:F, 6vkd:F, 6vke:F
10 8w4g:A 876 84 0.0457 0.0228 0.2381 8.7 8w4i:A, 8w4n:A, 8x8g:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218