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BioLiP
>protein
SAQDWHRADIVAALHKRGITLAGLSRAHGLAARTLSNAMERHYPRAERLIAQALDMRPEDIWPQRYRN

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7f9h:A 76 68 1.0000 0.8947 1.0000 1.30e-45 7f9h:B
2 6z2w:E 2325 46 0.2500 0.0073 0.3696 0.93 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
3 8tua:A 1329 62 0.2794 0.0143 0.3065 2.4 5d3x:A, 5d3x:B, 5d3y:A, 5d3y:B, 5fi0:A, 5fi0:C, 5fi0:E, 5fi0:G
4 6za0:A 240 52 0.2647 0.0750 0.3462 2.7 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
5 3kfu:F 447 37 0.2059 0.0313 0.3784 3.7 3kfu:I
6 5eqx:A 439 41 0.2059 0.0319 0.3415 5.3
7 6vwp:A 435 64 0.2353 0.0368 0.2500 6.1 6vwo:A, 6vwp:B, 6vwp:C, 6vwp:D, 6vwp:E, 6vwp:F, 6vwp:G, 6vwp:H
8 8owr:B 229 51 0.2206 0.0655 0.2941 6.2 6th2:B, 6th2:D
9 3h70:A 342 31 0.2059 0.0409 0.4516 7.2
10 7qcd:C 267 28 0.1618 0.0412 0.3929 7.4 3htk:C
11 1onx:A 389 39 0.1618 0.0283 0.2821 7.9 2aqo:A, 2aqo:B, 2aqv:A, 2aqv:B, 1onw:A, 1onw:B, 1onx:B, 1po9:A, 1po9:B, 1poj:A, 1poj:B, 1pok:B, 1pok:A, 1ybq:A, 1ybq:B
12 6zxu:A 701 42 0.2353 0.0228 0.3810 8.1 4ras:A, 4ras:B, 4ras:C, 6zxu:B, 6zxu:C, 6zxx:A, 6zxx:B, 6zxx:C, 6zy0:A, 6zy0:B, 6zy0:C, 6zy1:A, 6zy1:B, 6zy1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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