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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTR
LPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRALQTASVPNSPI

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5cli:A 160 159 1.0000 0.9938 1.0000 1.51e-111 5clj:A, 2fwi:A, 2fwj:A, 2fwp:A, 4z7j:A, 4z7j:B
2 2nsh:A 163 154 0.5912 0.5767 0.6104 1.76e-48 2ate:A, 1d7a:A, 1d7a:B, 1d7a:C, 1d7a:D, 2nsj:A, 2nsl:A
3 3rgg:A 156 151 0.3145 0.3205 0.3311 3.12e-10 3rgg:B, 3rgg:C, 3rgg:D
4 7ale:A 419 155 0.2516 0.0955 0.2581 0.004 7ale:B, 6yb8:A, 6yb8:B, 6yb9:A, 6yb9:B
5 6gl0:A 331 73 0.1509 0.0725 0.3288 0.32 6gl0:B, 6gl0:C
6 7e1q:A 366 52 0.0943 0.0410 0.2885 3.6 7e1r:A, 7e1r:C, 7e1s:C, 7e1s:A
7 7mvv:A 1542 28 0.0881 0.0091 0.5000 3.7 4knh:B, 7tbi:I1, 7tbi:I2, 7tbj:I1, 7tbj:I2, 7tbj:I3, 7tbj:I4, 7tbj:I5, 7tbk:I1, 7tbk:I2, 7tbk:I3, 7tbk:I4, 7tbk:I5, 7tbl:I1, 7tbl:I2, 7tbl:I3, 7tbl:I4, 7tbl:I5, 7tbm:I1, 7tbm:I2, 7tbm:I3, 7tbm:I4, 7tbm:I5
8 1ffy:A 917 48 0.1132 0.0196 0.3750 4.5 1qu2:A, 1qu3:A
9 4fk9:A 314 66 0.1321 0.0669 0.3182 5.1
10 6hiv:DD 791 69 0.1321 0.0265 0.3043 6.4 6hiw:DD, 6hiy:DD, 7pua:DD, 7pub:DD, 6sga:DD, 6sgb:DD
11 5hw4:A 228 82 0.1572 0.1096 0.3049 6.5 5hw4:B, 5hw4:C
12 3e1k:A 395 21 0.0692 0.0278 0.5238 7.0 3e1k:C, 3e1k:E, 3e1k:G, 3e1k:I, 3e1k:K, 3e1k:M, 3e1k:O
13 7ane:ad 694 82 0.1447 0.0331 0.2805 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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