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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV
PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQ
YLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTK
DFKALFSQVTSRF

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2q46:A 253 253 1.0000 1.0000 1.0000 0.0 2q46:B, 2q4b:A, 2q4b:B, 1xq6:A, 1xq6:B, 1ybm:A, 1ybm:B
2 3e8x:A 214 225 0.2451 0.2897 0.2756 1.19e-10
3 5l3z:A 280 232 0.2292 0.2071 0.2500 4.99e-06 5l4l:A
4 2gn4:A 329 212 0.1700 0.1307 0.2028 8.40e-06 2gn4:B, 2gn6:A, 2gn6:B, 2gn8:A, 2gn8:B, 2gn9:A, 2gn9:B, 2gna:A, 2gna:B
5 2zcv:A 283 170 0.1779 0.1590 0.2647 5.38e-05 2zcu:A
6 2jl1:A 287 236 0.2134 0.1882 0.2288 0.001 2vrb:A
7 8r2j:B 275 129 0.1542 0.1418 0.3023 0.004 8r2j:A
8 6jkh:A 212 85 0.0830 0.0991 0.2471 0.016 6jkh:B
9 3a1n:A 315 150 0.1660 0.1333 0.2800 0.018 3a1n:B, 3a4v:A, 3a4v:B, 3a9w:A, 3a9w:B, 3ajr:A, 3ajr:B
10 4j2o:C 316 192 0.1779 0.1424 0.2344 0.023 4j2o:A, 4j2o:B, 4j2o:D, 4j2o:E, 4j2o:F
11 7ymb:A 343 88 0.1146 0.0845 0.3295 0.031
12 4id9:B 328 148 0.1462 0.1128 0.2500 0.055 4id9:A, 4idg:A, 4idg:B
13 6nbr:A 316 151 0.1462 0.1171 0.2450 0.29 6nbr:B, 6nbr:C, 6nbr:D
14 2bka:A 231 181 0.1739 0.1905 0.2431 1.1
15 2ydx:A 312 76 0.0711 0.0577 0.2368 1.3 2ydx:C, 2ydx:B, 2ydx:D, 2ydx:E
16 2pv7:B 280 52 0.0632 0.0571 0.3077 1.4 2pv7:A
17 3rfv:A 265 70 0.0711 0.0679 0.2571 1.5 3rfv:B, 3rfv:C, 3rfx:A, 3rfx:B, 3rfx:C
18 3qvo:A 197 182 0.1621 0.2081 0.2253 2.3
19 4rkc:A 398 40 0.0632 0.0402 0.4000 2.6 4rkc:B, 4rkd:A, 4rkd:B, 4rkd:C, 4rkd:D, 4rkd:E, 4rkd:F, 4rkd:G, 4rkd:H, 6t3v:A, 6zup:B, 6zup:A, 6zur:B, 6zur:A, 6zvg:A, 6zvg:B, 6zvg:C, 6zvg:D
20 6kfa:A 162 49 0.0553 0.0864 0.2857 3.0 6kfb:A, 6kfd:A
21 2q1w:A 300 184 0.1700 0.1433 0.2337 3.8 2q1w:B, 2q1w:C
22 3pgy:B 404 37 0.0593 0.0371 0.4054 4.8 3pgy:A
23 4hxv:A 317 48 0.0593 0.0473 0.3125 7.3 4o7i:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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