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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4uuj:C 111 57 0.9649 0.4955 0.9649 6.08e-32 2bob:C, 2dwd:C, 2dwe:C, 2h8p:C, 2h8p:D, 2hfe:C, 2hfe:D, 2hg5:C, 2hg5:D, 2hvj:C, 3ifx:A, 3ifx:B, 3ifx:C, 3ifx:D, 2jk5:C, 7m2h:C, 7m2h:F, 3stz:C, 8thn:C, 2w0f:C
2 7ssy:A 346 52 0.3333 0.0549 0.3654 4.31e-04 7ssy:B, 7ssy:C, 7ssy:D, 7wf3:B, 7wf3:D, 7wf3:F, 7wf3:H
3 8x43:A 327 41 0.3158 0.0550 0.4390 5.73e-04 8j00:A, 8j00:B, 8j00:C, 8j00:D, 8x43:G, 8x43:C, 8x43:E
4 7cr7:A 354 41 0.3158 0.0508 0.4390 6.16e-04 7cr1:A, 7cr1:B, 7cr1:C, 7cr1:D, 7cr2:B, 7cr2:C, 7cr2:D, 7cr2:A, 7cr4:A, 7cr4:B, 7cr4:D, 7cr4:F, 7cr7:G, 7cr7:B, 7cr7:D, 8ijk:A, 8ijk:C, 8ijk:B, 8ijk:D, 8izy:A, 8izy:B, 8izy:D, 8izy:C, 8j01:G, 8j01:A, 8j01:B, 8j01:D, 8j02:G, 8j02:A, 8j02:B, 8j02:D, 8j03:A, 8j03:D, 8j03:G, 8j03:I, 8j04:A, 8j04:G, 8j04:B, 8j04:D, 8w4u:A, 8w4u:B, 8w4u:D, 8w4u:G
5 7byl:A 354 41 0.2982 0.0480 0.4146 7.21e-04 7byl:C, 7byl:E, 7byl:G, 7bym:A, 7bym:C, 7bym:E, 7bym:G, 7byn:A, 7byn:C, 7byn:E, 7byn:G, 7vnp:A, 7vnp:C, 7vnp:G, 7vnp:E, 7vnq:A, 7vnq:C, 7vnq:E, 7vnq:G
6 7vnr:A 333 41 0.2982 0.0511 0.4146 7.78e-04 7vnr:C, 7vnr:E, 7vnr:G
7 4jta:Q 363 52 0.3158 0.0496 0.3462 0.002 4jtc:H, 4jtd:H, 2r9r:H
8 5wie:B 390 52 0.3158 0.0462 0.3462 0.002 4jta:B, 4jtc:B, 4jtd:B, 3lnm:B, 2r9r:B
9 5wie:H 328 52 0.3158 0.0549 0.3462 0.002 3lnm:D
10 7xnk:A 348 43 0.2982 0.0489 0.3953 0.005 7tci:A, 7tci:G, 7tci:E, 7tci:C, 4umo:A, 6v01:A, 6v01:J, 6v01:D, 6v01:G, 7xnk:C, 7xnk:E, 7xnk:G, 7xnl:A, 7xnl:C, 7xnl:E, 7xnl:G, 7xnn:B, 7xnn:G, 7xnn:C, 7xnn:E
11 4chv:D 343 46 0.2982 0.0496 0.3696 0.009 4chw:D, 3cl1:A, 3cl1:B, 3clp:A, 3clp:C, 2k0g:A, 4muv:A, 4muv:B, 1u12:A, 1u12:B, 1vp6:A, 1vp6:C
12 7e8e:D 459 43 0.2105 0.0261 0.2791 0.024 7e87:B, 7e87:A, 7e87:C, 7e87:D, 7e8e:B, 1nn7:A, 7ukg:A, 7ukg:B, 7ukg:C, 7ukg:D
13 7rjt:A 902 44 0.2632 0.0166 0.3409 3.5 7rjt:B, 7rjt:C, 7rjt:D, 7rk6:A, 7rk6:B, 7rk6:C, 7rk6:D, 5tj6:A
14 2uyy:A 292 21 0.1404 0.0274 0.3810 7.0 2uyy:D
15 8quc:A 395 33 0.2281 0.0329 0.3939 7.2 8f1c:A, 8f1c:B, 8f1c:C, 8f1c:D, 8f1d:A, 8f1d:B, 8f1d:C, 8f1d:D, 7phi:C, 7phi:B, 7phi:D, 8quc:B, 8quc:D, 8quc:C, 8qud:A, 8qud:B, 8qud:C, 8qud:D
16 6v1x:A 446 17 0.1579 0.0202 0.5294 7.3 6v1x:B, 6v1x:C, 6v1x:D, 6v1y:A, 6v1y:B, 6v1y:C, 6v1y:D, 6v1y:M, 6v1y:N, 6v1y:O, 6v1y:P
17 5nof:A 325 27 0.1930 0.0338 0.4074 8.0 5nof:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218