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BioLiP
>protein
SAKSFILRKKELMKRRGRKVAKDSKFTGRKRRHRF

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7wtn:CB 35 35 1.0000 1.0000 1.0000 1.65e-17 7wtp:CB, 7wtq:CB, 7wtr:CB
2 7wtt:q 235 35 0.4857 0.0723 0.4857 4.36e-06 6g4w:q, 7wts:q, 7wtu:q, 7wtv:q, 7wtw:q
3 2cxn:A 557 20 0.2857 0.0180 0.5000 1.4 2cxo:A, 2cxo:B, 2cxp:A, 2cxp:B, 2cxq:A, 2cxq:B, 2cxr:A, 2cxr:B, 2cxs:A, 2cxs:B, 2cxt:A, 2cxt:B, 2cxu:A, 1u0f:A, 1u0g:A, 1u0g:B
4 6cgu:A 207 22 0.2571 0.0435 0.4091 3.3 6cgu:B, 6cgu:C, 6cgu:D, 3lnd:A, 3lnd:B, 3lnd:C, 3lnd:D
5 7ymi:7 344 18 0.2571 0.0262 0.5000 3.5 7ymi:3, 7ymm:23, 7ymm:13, 7ymm:43, 7ymm:33
6 2i14:A 389 24 0.2286 0.0206 0.3333 8.0 2i14:B, 2i14:C, 2i14:D, 2i14:E, 2i14:F
7 8fmw:Ai 46 24 0.3143 0.2391 0.4583 9.5 8fn2:i

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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