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BioLiP
>protein
SAKAPVITIFDHRGCSRAPKEYTGSKASGQDDEMMVKAQSVKIAVSDGVAESVLKDSLSVM

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7tja:G 67 61 1.0000 0.9104 1.0000 2.16e-39 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
2 1qgw:B 67 61 0.8197 0.7463 0.8197 2.04e-31 1xf6:B, 1xg0:B
3 1qgw:A 76 60 0.6393 0.5132 0.6500 2.13e-22 1xf6:A, 1xg0:A
4 7t8s:D 70 63 0.6230 0.5429 0.6032 8.20e-21 7t8s:H, 7t8s:L, 7t8s:P
5 7tja:I 75 56 0.5738 0.4667 0.6250 3.40e-18 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
6 7t8s:B 78 60 0.5738 0.4487 0.5833 5.37e-16 7t8s:F, 7t8s:J, 7t8s:N
7 7sut:C 63 60 0.5082 0.4921 0.5167 2.63e-14 7sut:G
8 4lms:C 68 61 0.5246 0.4706 0.5246 2.80e-13
9 7t7u:C 70 60 0.5082 0.4429 0.5167 4.98e-13
10 7t7u:A 81 58 0.3934 0.2963 0.4138 6.04e-11
11 4lms:A 80 56 0.3443 0.2625 0.3750 1.35e-08
12 7sut:A 78 47 0.2623 0.2051 0.3404 4.99e-05 7sut:E
13 7ssf:A 72 53 0.3115 0.2639 0.3585 0.010 7ssf:C, 7ssf:E, 7ssf:G
14 7s96:A 63 53 0.3115 0.3016 0.3585 0.038 7s96:C, 7s97:C, 7t89:A, 7t89:C
15 4lmx:C 66 56 0.3607 0.3333 0.3929 0.11 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
16 4lmx:E 66 56 0.3607 0.3333 0.3929 0.12 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
17 4lm6:A 62 53 0.2951 0.2903 0.3396 1.1 4lm6:C
18 2j7a:B 498 26 0.1803 0.0221 0.4231 1.9 2j7a:A, 2j7a:D, 2j7a:E, 2j7a:G, 2j7a:H, 2j7a:J, 2j7a:K, 2j7a:M, 2j7a:N, 2j7a:P, 2j7a:Q, 2vr0:A, 2vr0:B, 2vr0:D, 2vr0:E
19 9iq9:B 275 43 0.2295 0.0509 0.3256 6.4 7euk:A, 7euk:B, 7eul:A, 7eun:A, 7eun:B, 7euq:A, 7euq:B, 9iq9:A, 8ius:A, 8ius:B, 8iut:A, 8iut:B, 8iuu:A, 8iuu:B, 8iuv:A, 8iuv:B, 8iuw:A, 8iuw:B, 6lug:A, 6lug:B, 6luh:A, 6luh:B
20 6sup:A 2128 37 0.1475 0.0042 0.2432 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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