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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGV
KSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLN
PEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPP
FGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAK
TILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIP
IHVFGTETHMTAIVGMALGHRPIPGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFY
WGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIG
PATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVL
RYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQACANQASETAVAKNQALKEAGVFVP
RSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASFMTSICDERGQELIYAGMPITEVFKEEM
GIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADHGPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFS
KAFDSGIIPMEFVNKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPNLILNVAG
LIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISYVLPEHM

The query sequence (length=1032) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8g1e:A 1037 1037 1.0000 0.9952 0.9952 0.0 8g1e:B, 8g1e:D, 8g1e:C, 8g1f:A, 8g1f:C, 8g1f:B, 8g1f:D, 8g5c:A, 8g5c:B, 8g5c:C, 8g5c:D, 8g5d:A, 8g5d:B, 8g5d:C, 8g5d:D, 6hxh:A, 6hxh:B, 6hxh:C, 6hxh:D, 6hxh:E, 6hxh:F, 6hxh:G, 6hxh:H, 6hxk:A, 6hxk:B, 6hxk:C, 6hxk:D, 6hxl:A, 6hxl:B, 6hxl:C, 6hxl:D, 6hxl:E, 6hxl:F, 6hxl:G, 6hxl:H, 6hxm:A, 6hxm:B, 7liw:B, 7liw:D, 7lj9:A, 7lj9:B, 7lj9:C, 7lj9:D, 7lla:A, 7lla:C, 7lla:B, 7lla:D, 3mwe:A, 6o0h:A, 6o0h:B, 6o0h:C, 6o0h:D, 3pff:A, 6poe:B, 6poe:D, 6poe:A, 6poe:C, 6qfb:A, 6qfb:B, 6qfb:D, 7rig:A, 7rig:C, 7rig:B, 7rig:D, 7rkz:A, 7rkz:C, 7rkz:B, 7rkz:D, 7rmp:A, 7rmp:C, 7rmp:B, 7rmp:D, 5tde:A, 5tde:B, 5tdf:A, 5tdm:A, 5tdm:B, 5tdz:A, 5te1:A, 5te1:B, 5teq:A, 5teq:B, 5tes:A, 5tet:A, 6ui9:A, 6ui9:C, 6ui9:B, 6ui9:D, 6uia:C, 6uia:A, 6uia:D, 6uia:B, 6uuw:A, 6uuw:C, 6uuw:B, 6uuw:D, 6uuz:A, 6uuz:C, 6uuz:B, 6uuz:D, 6uv5:A, 6uv5:C, 6uv5:B, 6uv5:D, 6z2h:A, 6z2h:C, 6z2h:D
2 6qfb:C 1011 1028 0.9787 0.9990 0.9825 0.0
3 6hxi:B 616 612 0.3207 0.5373 0.5408 0.0 6hxi:D, 6znw:B
4 6hxi:C 410 422 0.1957 0.4927 0.4787 7.36e-125 6hxi:A, 6znw:A
5 6hxj:D 591 597 0.1977 0.3452 0.3417 1.41e-103 6hxj:B, 6hxj:F, 6hxj:H, 6hxn:A, 6hxn:B, 6hxo:A, 6hxo:B, 6hxo:F, 6hxo:G, 6hxo:H, 6nzy:A, 6nzy:D, 6qcl:B, 6qcl:E, 6qcl:F, 6qcl:G, 6qcl:H
6 6hxj:A 336 309 0.0988 0.3036 0.3301 5.75e-38 6hxj:C, 6hxj:E, 6hxj:G
7 6qcl:A 215 245 0.0814 0.3907 0.3429 1.24e-33
8 1scu:A 288 261 0.0891 0.3194 0.3525 3.19e-24 1cqi:A, 1cqi:D, 1cqj:A, 1cqj:D, 1jkj:A, 1jkj:D, 1jll:A, 1jll:D, 2nu6:A, 2nu6:D, 2nu7:A, 2nu7:D, 2nu8:A, 2nu8:D, 2nu9:A, 2nu9:D, 2nu9:F, 2nu9:H, 2nua:A, 2nua:D, 1scu:D, 2scu:A, 2scu:D
9 6hxo:E 180 181 0.0620 0.3556 0.3536 1.00e-23
10 6hxo:E 180 32 0.0145 0.0833 0.4688 0.021
11 6hxq:A 342 261 0.0736 0.2222 0.2912 1.30e-23 6hxq:C
12 6mgg:C 295 253 0.0707 0.2475 0.2885 3.68e-17 6mgg:A, 6pfn:A, 6pfn:C
13 6hxq:B 410 406 0.1056 0.2659 0.2685 7.78e-15
14 6xru:A 309 215 0.0620 0.2071 0.2977 2.55e-08 5cae:A, 1euc:A, 2fpg:A, 7msr:A, 7mss:A, 7mst:A, 6wcv:A, 4xx0:A
15 6hxp:A 256 203 0.0514 0.2070 0.2611 1.99e-06
16 2fp4:B 393 297 0.0746 0.1959 0.2593 1.32e-05 2fpg:B, 7jfp:B, 7jkr:B, 7jmk:B, 7msr:B, 6wcv:B
17 1jkj:B 388 309 0.0785 0.2088 0.2621 3.02e-04 1cqi:B, 1cqi:E, 1cqj:E, 1cqj:B, 1jkj:E, 1jll:E, 1jll:B, 2nu6:E, 2nu6:B, 2nu7:E, 2nu7:B, 2nu8:E, 2nu8:B, 2nu9:E, 2nu9:B, 2nu9:I, 2nu9:G, 2nua:E, 2nua:B, 1scu:E, 1scu:B, 2scu:E, 2scu:B
18 2ifc:C 382 216 0.0484 0.1309 0.2315 3.55e-04 2ifc:A, 2ifc:B, 2ifc:D, 2r26:A, 2r26:B, 2r26:C, 2r26:D, 2r9e:A, 2r9e:B, 2r9e:C, 2r9e:D, 4ybo:B, 4ybo:C
19 3ufx:B 378 262 0.0601 0.1640 0.2366 3.55e-04 3ufx:E, 3ufx:G, 3ufx:I
20 6aby:A 372 111 0.0310 0.0860 0.2883 4.72e-04 6abx:A, 6abx:B, 6aby:B
21 1iom:A 374 206 0.0494 0.1364 0.2476 5.21e-04 1ixe:A, 1ixe:B, 1ixe:C, 1ixe:D
22 6abw:A 369 224 0.0514 0.1436 0.2366 5.62e-04
23 8glb:D 374 210 0.0494 0.1364 0.2429 7.24e-04 8gi7:A, 8gi7:B, 8gi7:C, 8gi7:D, 8giw:A, 8giw:B, 8giw:C, 8giw:D, 8glb:A, 8glb:B, 8glb:C, 8gmi:A, 8gmi:B, 8gmi:C, 8gmi:D, 8gmi:E, 8gmi:F, 8gmi:G, 8gmi:H, 8gmk:A, 8gmk:B, 8s9d:A
24 2h12:B 426 130 0.0378 0.0915 0.3000 7.25e-04 2h12:A, 2h12:C, 2h12:D, 2h12:E, 2h12:F
25 1aj8:A 371 203 0.0475 0.1321 0.2414 0.002 1aj8:B
26 4jae:A 426 195 0.0475 0.1150 0.2513 0.002 4jae:B, 4jaf:A, 4jaf:B, 4jag:A, 4jag:B, 1nxg:A, 1nxg:B, 1owb:A, 1owb:B
27 2c6x:A 363 123 0.0349 0.0992 0.2927 0.002 2c6x:B, 2c6x:C, 2c6x:D
28 6c8z:A 488 85 0.0252 0.0533 0.3059 0.18 6xio:A
29 2anu:A 224 101 0.0281 0.1295 0.2871 0.36 2anu:B, 2anu:C, 2anu:D, 2anu:E, 2anu:F
30 5uqr:A 439 214 0.0504 0.1185 0.2430 0.58 6bol:A, 6bon:B, 6boo:B, 6boo:A, 6boo:D, 5uqr:B, 5uqu:A, 5uqu:B
31 7odr:M 291 148 0.0320 0.1134 0.2230 1.1 7a5f:M3, 7a5g:M3, 7a5h:M, 7a5i:M3, 7a5j:M, 7a5k:M3, 5aj4:BP, 8any:M, 6gaw:BP, 6gb2:BP, 6i9r:M, 3j7y:M, 3j9m:M, 8k2a:LO, 8k2b:LO, 7l08:M, 7l20:M, 7nqh:BP, 7nql:BP, 7nsh:BP, 7nsi:BP, 7nsj:BP, 6nu2:M, 6nu3:M, 7o9k:M, 7o9m:M, 7ods:M, 7odt:M, 7of0:M, 7of2:M, 7of3:M, 7of4:M, 7of5:M, 7of6:M, 7of7:M, 7og4:XM, 7oi7:M, 7oi8:M, 7oi9:M, 7oia:M, 7oib:M, 7oic:M, 7oid:M, 7oie:M, 8oin:BT, 8oiq:BT, 8oir:BT, 8oit:BT, 5ool:M, 5oom:M, 7pd3:M, 8pk0:M, 7qh6:M, 7qh7:M, 7qi4:M, 7qi5:M, 7qi6:M, 8qsj:M, 8qu1:M, 8qu5:M, 4v19:P, 6vlz:M, 6vmi:M, 8xt0:LO, 8xt1:LO, 8xt2:LO, 8xt3:LO, 6ydp:BP, 6ydw:BP, 6zm5:M, 6zm6:M, 6zs9:XM, 6zsa:XM, 6zsb:XM, 6zsc:XM, 6zsd:XM, 6zse:XM, 6zsg:XM
32 7po4:M 269 148 0.0320 0.1227 0.2230 1.2 7oi6:M
33 3amg:A 311 86 0.0271 0.0900 0.3256 1.4 3aof:B, 3aof:A, 3azr:A, 3azr:B, 3azs:A, 3azs:B, 3azt:A, 3azt:D, 3mmw:A, 3mmw:B, 3mmw:C, 3mmw:D
34 3amg:B 291 86 0.0271 0.0962 0.3256 1.4
35 4nj5:A 482 44 0.0145 0.0311 0.3409 2.0
36 8b1n:A 433 207 0.0494 0.1178 0.2464 2.8 8byh:A, 8byh:B, 8ri0:A, 8ri0:B
37 8bp7:E 379 114 0.0281 0.0765 0.2544 3.8 8bp7:B, 8bp7:D, 8bp7:F
38 6zdp:A 683 49 0.0194 0.0293 0.4082 5.4
39 7yiv:A 484 60 0.0194 0.0413 0.3333 5.9 7yiv:D, 7yiv:C, 7yiv:B, 7yiv:G, 7yiv:H, 7yiv:F, 7yiv:E, 7yiw:A, 7yiw:D, 7yiw:C, 7yiw:B, 7yiw:G, 7yiw:H, 7yiw:F, 7yiw:E, 7yix:A, 7yix:B
40 6wvv:K 440 163 0.0378 0.0886 0.2393 7.4
41 4m1m:A 1188 209 0.0504 0.0438 0.2488 8.1 8avy:A, 6fn1:A, 3g60:A, 3g60:B, 3g61:A, 3g61:B, 5koy:A, 5koy:B, 4m1m:B, 4m2s:A, 4m2s:B, 4m2t:A, 4m2t:B, 7otg:A, 8pee:A, 6q81:A, 4q9i:A, 4q9j:A, 4q9k:A, 4q9l:A, 6qee:A, 6ujn:A, 6ujp:A, 6ujr:A, 6ujs:A, 6ujt:A, 6ujw:A, 4xwk:A, 7zk4:A, 7zk5:A, 7zk6:A, 7zk7:A, 7zk8:A, 7zk9:A, 7zka:A, 7zkb:A
42 1aut:C 240 91 0.0252 0.1083 0.2857 9.4 3f6u:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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