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BioLiP
>protein
SAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTT
INKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVK

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v6x:Cr 137 126 0.9921 0.9124 0.9921 5.93e-90 7a01:J2, 8a3d:k, 5aj0:At, 8b5l:r, 8b6c:r, 9bdl:ALNW, 9bdn:ALNW, 9bdp:ALNW, 7bhp:Lr, 8bhf:d1, 8bpo:p2, 8btk:Br, 7cpu:Lr, 7cpv:Lr, 4d5y:t, 4d67:t, 6d90:r, 6d9j:r, 9f1b:Br, 9f1c:Br, 9f1d:Br, 7f5s:Lr, 8fkq:LL, 8fks:LL, 8fku:LL, 8fkw:LL, 8fkx:LL, 8fky:LL, 8fkz:LL, 8fl0:LL, 8fl2:LL, 8fl3:LL, 8fl4:LL, 8fl6:LL, 8fl7:LL, 8fl9:LL, 8fla:LL, 8flb:LL, 8flc:LL, 8fld:LL, 8fle:LL, 8flf:LL, 9fpz:Lr, 9fq0:Lr, 6frk:3, 6ftg:r, 6fti:r, 6ftj:r, 8g5y:Lr, 8g5z:Lr, 8g60:Lr, 8g61:Lr, 8g6j:Lr, 8glp:Lr, 6gz3:At, 6gz4:At, 6gz5:At, 6hcf:r3, 6hcj:r3, 6hcm:r3, 6hcq:r3, 8idt:l, 8idy:l, 8ie3:l, 8ifd:2k, 8ife:2k, 8ine:l, 8inf:l, 8ink:l, 6ip5:2k, 6ip6:2k, 6ip8:2k, 8ipd:l, 8ipx:l, 8ipy:l, 8ir1:l, 8ir3:l, 3j7o:r, 3j7p:r, 3j7q:r, 3j7r:r, 3j92:r, 3jag:r, 3jah:r, 3jai:r, 3jaj:r, 3jan:r, 8jdj:v, 8jdk:v, 8jdl:v, 8jdm:v, 8k2c:Lr, 5lks:Lr, 6lqm:l, 6lsr:l, 6lss:l, 7ls1:k2, 7ls2:k2, 6lu8:l, 5lzs:r, 5lzt:r, 5lzu:r, 5lzv:r, 5lzw:r, 5lzx:r, 5lzy:r, 5lzz:r, 7mdz:r, 6mtb:r, 6mtc:r, 6mtd:r, 6mte:r, 7nfx:r, 7nwg:r3, 7nwh:r, 7nwi:r, 7o7y:Br, 7o7z:Br, 7o80:Br, 7o81:Br, 7obr:r, 8ohd:Lr, 8oj0:Lr, 8oj5:Lr, 8oj8:Lr, 6ole:r, 6olf:r, 6olg:At, 6oli:r, 6olz:At, 6om0:r, 6om7:r, 7ow7:k, 7oyd:r, 8p2k:Br, 6p5i:Ar, 6p5j:Ar, 6p5k:Ar, 6p5n:Ar, 8qfd:r, 7qgg:r, 8qoi:Lr, 7qvp:Lr, 7qvp:Mr, 7qwq:r, 7qwr:r, 7qws:r, 6qzp:Lr, 6r5q:r, 6r6g:r, 6r6p:r, 6r7q:r, 8rjb:r, 8rjc:r, 8rjd:r, 8scb:r, 6sgc:r2, 6swa:p, 5t2c:k, 6t59:r3, 7tm3:r, 7toq:EL28, 7tor:ALNW, 7tut:r, 7ucj:r, 7uck:r, 4ug0:Lr, 4ujc:Bt, 4ujd:At, 4uje:Ct, 6w6l:r, 6xa1:Lr, 7xnx:Lr, 7xny:Lr, 8xsx:Lr, 8xsy:Lr, 8xsz:Lr, 6y0g:Lr, 8y0w:Lr, 8y0x:Lr, 6y2l:Lr, 6y57:Lr, 6y6x:Lr, 8yoo:Lr, 8yop:Lr, 6z6l:Lr, 6z6m:Lr, 6z6n:Lr, 7zjw:Ls, 7zjx:Ls, 6zm7:Lr, 6zme:Lr, 6zmi:Lr, 6zmo:Lr, 6zvk:J2
2 8q7z:Br 126 126 0.8254 0.8254 0.8254 6.75e-78 8q87:Br
3 7oyc:r1 118 118 0.7460 0.7966 0.7966 1.75e-71
4 7oya:r1 118 117 0.7619 0.8136 0.8205 2.47e-70 7oyb:r1
5 4v6w:Cr 134 128 0.4762 0.4478 0.4688 1.23e-38 6xu6:Cr, 6xu7:Cr, 6xu8:Cr
6 7olc:Lq 141 123 0.4206 0.3759 0.4309 1.51e-24 8i9w:CV, 8i9x:CV, 8i9y:CV, 8i9z:CV, 8ia0:CV, 7old:Lq, 8oo0:Lq, 8pv1:Lq, 8pv2:Lq, 8pv3:Lq, 8pv4:Lq, 8pv5:Lq, 8pv6:Lq, 8pv7:Lq, 8pv8:Lq, 8pvk:Lq, 8pvl:Lq, 7z3n:Lq, 7z3o:Lq
7 7r81:s1 149 127 0.4286 0.3624 0.4252 1.46e-19
8 8ip8:QA 142 122 0.3571 0.3169 0.3689 2.34e-18 8ipa:QA, 8ipb:QA, 8jiv:Cr
9 8azw:N 142 125 0.3254 0.2887 0.3280 3.19e-18 8b2l:N3, 7qiw:r, 7qiz:r
10 5xxb:p 122 122 0.2778 0.2869 0.2869 2.87e-07
11 5t5h:c 120 113 0.2698 0.2833 0.3009 6.75e-07
12 8ova:Bc 144 113 0.2619 0.2292 0.2920 6.95e-07 8ove:Bc, 4v8m:Bc
13 4v8p:AO 134 53 0.1349 0.1269 0.3208 5.07e-05 4v8p:DO, 4v8p:FO, 4v8p:HO
14 4v3p:Lb 73 71 0.1825 0.3151 0.3239 1.74e-04 4v7e:Cr
15 1bhy:A 482 42 0.1111 0.0290 0.3333 4.3 1ojt:A, 5u25:A
16 7bkq:A 640 40 0.0873 0.0172 0.2750 5.7
17 7bkp:A 689 40 0.0873 0.0160 0.2750 6.4 6g19:A, 6gjz:A, 6gkh:A, 6gkm:A, 6h66:A, 7nic:A, 7niq:B
18 5u2i:B 151 41 0.1270 0.1060 0.3902 6.7 5u2i:D
19 7tbw:A 1928 63 0.1508 0.0099 0.3016 6.8
20 6h61:A 660 40 0.0873 0.0167 0.2750 6.8 6g1s:A, 6g1x:A, 7nga:A
21 6ui5:A 497 32 0.0873 0.0221 0.3438 7.3 6ui5:B
22 8bja:A 1563 39 0.1111 0.0090 0.3590 7.9
23 5c71:A 583 78 0.1825 0.0395 0.2949 8.1 5c71:C
24 8p82:A 1596 39 0.1111 0.0088 0.3590 8.3 8p82:B
25 7roq:A 1831 64 0.1508 0.0104 0.2969 8.4
26 8d4x:B 1669 39 0.1111 0.0084 0.3590 9.2 8c06:A, 8c06:D
27 7tby:A 1788 39 0.1111 0.0078 0.3590 9.5 7tc0:A
28 8e0q:A 1689 39 0.1111 0.0083 0.3590 9.6 8d4x:A, 8e0q:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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