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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SAFDLGFIRGMTFGFVGQHGTWGTDEARASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHA
LGLKVCLKPTVNCRDGTWRGEIRFEKEHGPDLESWEAWFGSYSDMMAHYAHVAKRTGCEMFCVGCEMTTAEPHEAMWRET
IARVRTEYDGLVTYNCNHGREEHVRFWDAVDLISSSAYYPIDRWRDRVPVLREVAEAHEKPLFFMEVGCPSRSGSGACPW
DYRHPGAVCLDEQARFYEAMFAAMPDEPWFKGYMLWEWPWKLYPREAASEDGSYCIYGKPAEDVVARAFSAIAN

The query sequence (length=314) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4cd6:A 315 314 1.0000 0.9968 1.0000 0.0 4cd7:A, 4cd7:B, 4cd8:A
2 7dwa:B 327 312 0.4427 0.4251 0.4455 6.68e-101 7dvj:B, 7dvj:A, 7dw8:A, 7dw8:B, 7dwa:A
3 5yli:B 309 308 0.4204 0.4272 0.4286 4.32e-93 5yli:A, 5ylk:B, 5ylk:A, 5yll:B, 5yll:A, 5z4t:B, 5z4t:A
4 1vh3:B 246 158 0.1083 0.1382 0.2152 0.82 1vh3:A
5 5l5a:Y 211 55 0.0510 0.0758 0.2909 2.0 5l5a:K, 5l5b:Y, 5l5b:K, 5l5d:Y, 5l5d:K, 5l5e:Y, 5l5e:K, 5l5f:Y, 5l5f:K, 5l5h:Y, 5l5h:K, 5l5i:Y, 5l5i:K, 5l5j:Y, 5l5j:K, 5l5o:Y, 5l5o:K, 5l5p:Y, 5l5p:K, 5l5q:Y, 5l5q:K, 5l5r:Y, 5l5r:K, 5l5s:Y, 5l5s:K, 5l5t:Y, 5l5t:K, 5l5u:Y, 5l5u:K, 5l5v:Y, 5l5v:K, 5l65:Y, 5l65:K, 5l66:Y, 5l66:K, 5l67:Y, 5l67:K, 5l68:Y, 5l68:K, 5l69:Y, 5l69:K, 5l6a:Y, 5l6a:K, 5l6b:Y, 5l6b:K, 5l6c:Y, 5l6c:K, 5ltt:K, 5ltt:Y, 5m2b:Y, 5m2b:K
6 7awe:L 203 55 0.0573 0.0887 0.3273 3.4 6avo:C, 6avo:D, 7awe:Z, 7b12:L, 7b12:Z, 6e5b:K, 6e5b:Y, 3unf:K, 3unf:Y
7 6ip0:A 472 62 0.0637 0.0424 0.3226 4.6 6ip4:A
8 6r61:A 350 43 0.0446 0.0400 0.3256 5.2 6r6a:A
9 4lxf:B 546 44 0.0446 0.0256 0.3182 7.6
10 3qgv:A 435 30 0.0382 0.0276 0.4000 7.9
11 6hjs:A 236 99 0.0860 0.1144 0.2727 9.1 6hjs:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218