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BioLiP
>protein
SAEKAVLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGDADRKHCKFKPDPNIPPTFSAFNEDYVGSG
WSRGAMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQ
VIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHLDRTSDIRNICS
VDTCKLLDFQEFTLYLSTRKIEGARSVLRLEKIMENLKNAEIEPDDYFMSRYEKKLEELKAKE

The query sequence (length=303) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zki:B 304 302 0.9967 0.9934 1.0000 0.0 6iid:A, 6iid:B, 6iid:C, 6iid:D, 7r6t:D, 7r6t:C, 7r6t:L, 7r6v:D, 7r6v:G, 7r6v:E, 7r6v:I, 5t4i:B, 5t4i:A, 5t5c:A, 5t5c:B, 5zki:A, 5zkj:B, 5zkj:A
2 6nju:D 229 223 0.2970 0.3930 0.4036 2.51e-56 6lyf:D, 6m3f:B, 6m3t:A, 6m3t:B
3 5gkp:B 239 238 0.3036 0.3849 0.3866 1.23e-51 5gkp:A
4 1zm8:A 239 215 0.2079 0.2636 0.2930 4.93e-22
5 1g8t:A 241 231 0.2178 0.2739 0.2857 1.09e-11 1g8t:B
6 6wev:AbA 817 223 0.1650 0.0612 0.2242 0.002 8ghr:A, 8ghr:B, 6wet:AaA, 6wet:BaB, 6weu:AbA, 6weu:BbB, 6wev:BbB, 6wew:AbA, 6wew:BaB, 6wfj:AcA, 6wfj:BcB
7 6c01:A 819 226 0.1683 0.0623 0.2257 0.005 6c01:B, 6c02:A, 6c02:B
8 4b56:A 816 189 0.1485 0.0551 0.2381 0.018 6aek:A, 6ael:A, 4b56:B
9 8ibk:A 546 122 0.0924 0.0513 0.2295 0.092 8ids:A, 5zcb:A, 5zcc:A, 5zcd:A, 5zce:A
10 3lba:A 260 70 0.0759 0.0885 0.3286 1.0
11 6sup:A 2128 102 0.1122 0.0160 0.3333 1.6
12 8fni:9 858 114 0.0858 0.0303 0.2281 4.7 8fnk:9
13 3oha:A 516 39 0.0429 0.0252 0.3333 7.1 3mfh:A, 3mfi:A, 3ohb:A, 2r8j:A, 2r8j:B, 2r8k:A, 2r8k:B, 5vtp:A, 2wtf:A, 2wtf:B, 2xgp:A, 2xgp:B, 2xgq:A, 2xgq:B
14 6pjx:A 542 61 0.0495 0.0277 0.2459 7.3 4tnb:A, 4tnd:A, 8uap:A, 8uaq:A, 4wnk:A
15 8sq0:A 1402 80 0.0693 0.0150 0.2625 9.2 8sq0:B, 8sql:A, 8sqm:A
16 5yeu:A 381 63 0.0495 0.0394 0.2381 9.7 5yeu:B
17 7rbw:A 381 33 0.0396 0.0315 0.3636 9.7 7rbw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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