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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SADIVGMHYRYPDHYEVEREKIREYAVAVQNDDAWYFEEDGAAELGYKGLLAPLTFICVFGYKAQAAFFKHANIATAEAQ
IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDLVQETYTTLAGRAGEDGEGFSDG

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rlt:A 155 153 0.9869 0.9742 0.9869 1.36e-108 4rlu:A, 4rlw:A, 7svt:A, 7svt:H, 7svt:O, 7svt:V
2 4v12:A 337 142 0.3268 0.1484 0.3521 1.08e-21
3 6tl4:A 496 41 0.1111 0.0343 0.4146 0.15
4 1reo:A 484 42 0.0850 0.0269 0.3095 0.38 1tdk:A, 1tdn:A, 1tdo:A
5 3kve:A 484 42 0.0850 0.0269 0.3095 0.45 3kve:B, 3kve:C, 3kve:D
6 1f8r:A 483 42 0.0850 0.0269 0.3095 0.51 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
7 8x2h:A 2363 36 0.0850 0.0055 0.3611 0.52 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
8 8x2h:A 2363 42 0.0784 0.0051 0.2857 6.9 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
9 8x2i:A 2303 36 0.0850 0.0056 0.3611 0.53
10 8x2i:A 2303 42 0.0784 0.0052 0.2857 7.0
11 7rzw:B 864 41 0.0980 0.0174 0.3659 1.1 7rzw:A
12 8wp1:A 304 50 0.1242 0.0625 0.3800 3.3 8jpn:R
13 8ykv:R 271 50 0.1242 0.0701 0.3800 4.1
14 4our:A 448 37 0.0850 0.0290 0.3514 5.2 4our:B
15 6tby:AAA 320 59 0.1111 0.0531 0.2881 5.3 6tc5:AAA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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