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BioLiP
>protein
SAAQKFVKQVIREAFLQDASDIHIEPRQNDVQVRLRIDGALRPYSTLPKGALNAVISVVKIMGGLNIAEKRLPQDGRVRY
REGAIDVDLRLSTLPTVYGEKAVMRLLKKASDIPEIEDLGFAPGVFERFKEVISKPYGIFLITGPTGSGKSFTTFSILKR
IATPDKNTQTIEDPVEYEIPGINQTQVNPQAGLTFARALRAFLRQDPDIIMVGEIRDSETAKIATEAALTGHLVIATLHT
NDAAQAITRLDEMGVEPFNISAALIGVLSQRLVRRVCEHCKVEVKPDPETLRRLGLSEAEIQGARLYKGMGCERCGGTGY
KGRYAIHELLVVDDEIRHAIVAGKSATEIKEIARRKGMKTLREDGLYKALQGITTLEEVLARTIE

The query sequence (length=385) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5oiu:C 386 385 1.0000 0.9974 1.0000 0.0 5it5:F, 5it5:A, 5it5:B, 5it5:E, 5it5:C, 5it5:D, 5oiu:A, 5oiu:B, 5oiu:D, 5oiu:E, 5oiu:F
2 5tsh:E 387 381 0.4805 0.4780 0.4856 8.92e-123 5tsg:B, 5tsg:C, 5tsg:D, 5tsh:A, 5tsh:B, 5tsh:C, 5tsh:D, 5tsh:F, 5zfr:A, 5zfr:B, 5zfr:C
3 4pht:B 442 378 0.4805 0.4186 0.4894 1.08e-121 1p9r:A, 1p9w:A, 4pht:A, 4pht:C
4 8dzg:A 420 247 0.2208 0.2024 0.3441 3.29e-33 8dze:A, 8dze:B, 8dze:C, 8dze:D, 8dze:E, 8dze:F, 8dzf:A, 8dzf:B, 8dzf:C, 8dzf:D, 8dzf:E, 8dzf:F, 8dzg:B, 8dzg:C, 8dzg:D, 8dzg:E, 8dzg:F
5 2ewv:A 343 390 0.3117 0.3499 0.3077 8.79e-32 2eww:A, 2gsz:F
6 6ojz:D 361 290 0.2597 0.2770 0.3448 8.30e-31 6ojx:A, 6ojx:B, 6ojx:C, 6ojz:A, 6ojz:B, 6ojz:C, 6ojz:E, 6ojz:F, 6ok2:A, 6ok2:B, 6ok2:C, 6ok2:D, 6ok2:E, 6ok2:F, 6okv:A, 6okv:B, 6okv:C, 6okv:D, 6okv:E, 6okv:F, 6olm:A, 6olm:B, 6olm:C, 6olm:D, 6olm:E, 6olm:F
7 5fl3:A 354 275 0.2597 0.2825 0.3636 2.33e-30
8 3jvv:C 337 199 0.2052 0.2344 0.3970 1.90e-29 3jvv:A, 3jvv:B
9 2oap:2 503 138 0.1195 0.0915 0.3333 1.69e-11 2oap:1, 2oaq:2
10 4ihq:A 512 263 0.1792 0.1348 0.2624 6.97e-11 4ihq:B, 4ihq:C
11 8rjf:A 424 196 0.1429 0.1297 0.2806 2.66e-07 8rjf:B, 8rjf:C, 8rjf:D, 8rjf:E, 8rjf:F, 8rkd:F, 8rkd:A, 8rkd:C, 8rkd:D
12 6bge:A 323 184 0.1455 0.1734 0.3043 2.21e-06 6bge:B, 1g6o:A, 1g6o:B, 1nly:A, 1nly:B
13 1mv5:A 242 88 0.0727 0.1157 0.3182 0.091 1mv5:B, 1mv5:C, 1mv5:D
14 6d3r:A 1127 92 0.0753 0.0257 0.3152 0.48 6d3s:A
15 7w0b:A 1586 62 0.0519 0.0126 0.3226 1.4 7w0d:F
16 8hf0:A 1561 61 0.0519 0.0128 0.3279 2.2 8hf0:D, 8hf1:A, 8hf1:D, 8hf1:G, 7w0a:A, 7w0a:E, 7w0c:A, 7w0d:A, 7w0e:A, 7w0f:A
17 1ksf:X 714 25 0.0338 0.0182 0.5200 2.4 1mbu:A, 1mbu:B, 1mbx:A, 1mbx:B, 1r6b:X, 1r6o:A, 1r6o:B, 1r6q:A, 1r6q:B, 7uiv:B, 7uiv:C, 7uiv:D, 7uiv:E, 7uiv:A, 7uiv:F, 7uiw:A, 7uiw:B, 7uiw:C, 7uiw:D, 7uiw:E, 7uix:B, 7uix:C, 7uix:D, 7uix:E, 7uix:F, 7uix:A, 7uiy:B, 7uiy:C, 7uiy:D, 7uiy:E, 7uiy:A, 7uiy:F, 7uiz:B, 7uiz:C, 7uiz:D, 7uiz:E, 7uiz:A, 7uiz:F, 7uj0:B, 7uj0:C, 7uj0:D, 7uj0:E, 7uj0:A, 7uj0:F, 6uqe:A, 6uqe:B, 6uqe:C, 6uqe:D, 6uqe:E, 6uqe:F, 6uqo:C, 6uqo:D, 6uqo:A, 6uqo:B, 6uqo:E, 6uqo:F, 6w1z:A, 6w1z:B, 6w1z:C, 6w1z:D, 6w1z:E, 6w1z:F, 6w20:A, 6w20:B, 6w20:C, 6w20:D, 6w20:E, 6w20:F, 6w21:A, 6w21:B, 6w21:C, 6w21:D, 6w21:E, 6w21:F, 6w22:A, 6w22:B, 6w22:C, 6w22:D, 6w22:E, 6w22:F, 6w23:A, 6w23:B, 6w23:C, 6w23:D, 6w23:E, 6w23:F, 6w24:A, 6w24:B, 6w24:C, 6w24:D, 6w24:E, 6w24:F
18 1iqc:A 308 32 0.0312 0.0390 0.3750 2.4 1iqc:B, 1iqc:C, 1iqc:D
19 4rkm:B 660 44 0.0416 0.0242 0.3636 2.7 4rkm:A, 4rkm:I, 4rkm:C, 4rkm:D, 4rkm:K, 4rkm:E, 4rkm:F, 4rkm:H, 4rkm:L, 4rkm:J, 4rkm:G, 4rkn:A, 4rkn:C, 4rkn:B, 4rkn:D
20 4ayx:A 571 66 0.0571 0.0385 0.3333 2.9 4ayt:A, 4ayw:A, 7y48:B, 3zdq:A
21 8x2i:A 2303 31 0.0312 0.0052 0.3871 3.1
22 8x2h:A 2363 31 0.0312 0.0051 0.3871 3.1 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
23 6n91:A 334 45 0.0468 0.0539 0.4000 3.9 6n91:B
24 1a0i:A 332 83 0.0519 0.0602 0.2410 4.7
25 1um8:A 327 60 0.0442 0.0520 0.2833 4.8
26 7v6c:A 1540 49 0.0442 0.0110 0.3469 4.9
27 8h3h:A 539 44 0.0442 0.0315 0.3864 5.8 8h3h:B, 8h3h:C, 8h3h:D, 8h3h:E, 8h3h:F, 8juw:A, 8juw:B, 8juw:C, 8juw:D, 8juw:E, 8juw:F, 8juy:A, 8juy:B, 8juy:C, 8juy:D, 8juy:E, 8juy:F, 8juz:A, 8juz:B, 8juz:C, 8juz:D, 8juz:E, 8juz:F
28 6vfs:A 295 44 0.0338 0.0441 0.2955 5.8
29 6lcd:A 373 67 0.0571 0.0590 0.3284 6.2 6lcd:B
30 7oar:B 413 31 0.0312 0.0291 0.3871 7.0
31 7oar:A 442 31 0.0312 0.0271 0.3871 8.0 7bil:A, 7bil:B, 6s3h:A, 6s3h:B, 6s3i:A, 6s3m:A, 6s3m:B, 6s3n:A, 6s3n:B, 6s3o:A, 6s3p:A
32 5d39:A 489 104 0.0779 0.0613 0.2885 8.0 5d39:C, 5d39:B, 5d39:D, 4y5w:B, 4y5w:D, 4y5w:A
33 8ptk:f 4502 26 0.0338 0.0029 0.5000 9.1 8ptk:e
34 7z8f:e 4579 26 0.0338 0.0028 0.5000 9.2 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
35 7zoa:B 570 41 0.0442 0.0298 0.4146 9.3 7znu:A, 7znu:B, 7zo9:A, 7zo9:B, 7zoa:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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