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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SAAMPQMISLSEIEAVACPCGWAQRAFGHDAGTSVSVHYTQITKAARTHYHREHQEIYVVLDHAAHATIELNGQSYPLTK
LLAISIPPLVRHRIVGEATIINIVSPPFDPADEWF

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4h7l:B 117 114 0.9913 0.9744 1.0000 5.83e-83 4h7l:A
2 5oo4:A 121 62 0.1478 0.1405 0.2742 0.87 5oo5:A, 5oo8:A, 5oo9:A, 5ooa:A
3 5ocr:A 278 88 0.1652 0.0683 0.2159 1.1 5ocr:B, 5ocr:C, 5ocr:D
4 8t2v:A 946 28 0.1043 0.0127 0.4286 3.8 4cak:A, 3fcs:A, 3fcs:C, 3fcu:A, 3fcu:C, 3fcu:E, 8gcd:A, 8gce:A, 5hdb:A, 5hdb:C, 7l8p:A, 7l8p:C, 7la4:A, 3nid:A, 3nid:C, 3nif:A, 3nif:C, 3nig:A, 3nig:C, 8t2u:A, 3t3m:A, 3t3m:C, 3t3p:A, 3t3p:C, 7tct:A, 7tct:C, 7td8:A, 7td8:C, 7tho:A, 7tho:C, 7tmz:A, 7tmz:C, 7tpd:A, 7tpd:C, 1tye:A, 1tye:C, 1tye:E, 7u60:A, 7u60:C, 7u9f:A, 7u9f:C, 7u9v:A, 7u9v:C, 7ubr:A, 7ubr:C, 7ucy:A, 7ucy:C, 7udg:A, 7udg:C, 7udh:A, 7udh:C, 7ue0:A, 7ue0:C, 7ufh:A, 7ufh:C, 7uh8:A, 7uh8:C, 7uje:A, 7uje:C, 7ujk:A, 7ujk:C, 7uk9:A, 7uk9:C, 7uko:A, 7uko:C, 7ukp:A, 7ukp:C, 7ukt:A, 7ukt:C, 6v4p:A, 2vc2:A, 2vdk:A, 2vdl:A, 2vdm:A, 2vdn:A, 2vdo:A, 2vdp:A, 2vdq:A, 2vdr:A, 4z7n:A, 4z7n:C, 4z7o:A, 4z7o:C, 4z7q:A, 4z7q:C, 3zdx:A, 3zdx:C, 3zdy:A, 3zdy:C, 3zdz:A, 3zdz:C, 3ze0:A, 3ze0:C, 3ze1:A, 3ze1:C, 3ze2:A, 3ze2:C
5 4fnm:A 569 26 0.0957 0.0193 0.4231 7.7 5ch5:A, 5ivi:A, 5ivk:A, 4qwm:A, 5tyj:A, 5tyk:A, 5tyl:A, 5tym:A, 5tyn:A, 5tyo:A, 5typ:A, 4ubi:A, 4ubj:A, 4ubk:A, 4ubl:A, 4ubm:A, 4ubn:A, 4ubo:A, 4w1p:A, 4w1q:A, 4w1r:A, 4w1s:A
6 1zj6:A 173 27 0.1043 0.0694 0.4444 8.6 2h16:A, 2h16:B, 2h16:C, 2h16:D, 2h17:A, 1z6y:A, 1z6y:B
7 3ibm:B 146 41 0.1217 0.0959 0.3415 9.7 3ibm:A
8 7lvz:D 246 19 0.0696 0.0325 0.4211 9.9 7lvz:A, 7lvz:B, 7lvz:C
9 7rei:A 243 19 0.0696 0.0329 0.4211 10.0 8u9j:A, 8u9j:B, 8uan:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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