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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RYSLRQDIAVEPVIAGWYGWSYLLPPQTLARFVHNRFNRIVESYLDDPQVHAAAVRQRRMHGGPWIHAHEHRDAIEAWYR
ETAPRRERLDELFEAVRRLEEDILPRHHGECLDPVYQELPAALAGRVEVFYGRDNRTADYRFVEPLMYASEYYDESWQQV
RFRPVTEDAREFALTTPMLEYGPEQLLVNVPLNSPLLDAVFRGGLTGTELDDLAARFGLDGERAARFASYFEPTPEDVLE
YVGHACVFARHRGTTFLVDPVLSYSGYPGGAENRFTFADLPERIDHLLITHNHQDHMLFETLLRIRHRVGRVLVPKSTNA
SLVDPGLGGILRRLGFTDVVEVDDLETLSCGSAEVVALPFLGDHGDLRIRSKTGWLIRFGERSVLFAADSTNISPTMYTK
VAEVIGPVDTVFIGMESIGAAASWIYGPLYGEPLDRRTDQSRRLNGSNFPQAREIVDALEPDEVYVYAMGLEPWMGVVMP
AIVDSDLLVRHVQDKGGTAERLHLRRTLRL

The query sequence (length=510) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jo0:A 522 519 0.9980 0.9751 0.9807 0.0 5kik:A, 5kil:A
2 8a90:B 530 527 0.3490 0.3358 0.3378 9.38e-94 8a90:A
3 8p90:B 334 205 0.1039 0.1587 0.2585 2.20e-08 8p90:A, 8p96:A, 8p96:B, 8pc4:A, 8pc4:B, 4qn9:A, 4qn9:B
4 7t28:A 238 86 0.0647 0.1387 0.3837 0.001
5 3rpc:A 262 212 0.1059 0.2061 0.2547 0.023 3rpc:B, 3rpc:C, 3rpc:D
6 6brm:B 263 215 0.0980 0.1901 0.2326 0.034 6brm:A, 6brm:C, 6brm:D, 6brm:E, 6brm:F, 6brm:G, 6brm:H
7 7fct:B 239 167 0.0725 0.1548 0.2216 0.076 7fct:A
8 2ycb:B 635 62 0.0353 0.0283 0.2903 0.20 2ycb:A
9 3wqy:A 905 55 0.0373 0.0210 0.3455 0.30 3wqy:B, 3wqz:A, 3wqz:B, 2ztg:A
10 2vou:A 393 109 0.0627 0.0814 0.2936 0.40 2vou:B, 2vou:C
11 2i7t:A 404 167 0.0863 0.1089 0.2635 1.7
12 3kl7:A 220 60 0.0333 0.0773 0.2833 2.4
13 4o98:B 307 103 0.0608 0.1010 0.3010 2.4 4o98:A
14 5zb3:A 280 37 0.0294 0.0536 0.4054 2.5 5zb1:A, 5zb3:B
15 6i1d:A 458 82 0.0490 0.0546 0.3049 2.6
16 2i7v:A 433 154 0.0745 0.0878 0.2468 3.0 8t1q:A, 8t1r:A
17 4le6:A 257 103 0.0608 0.1206 0.3010 3.5 4le6:B, 4le6:C, 4le6:D, 4le6:E
18 6bcq:B 983 62 0.0490 0.0254 0.4032 3.8 6bco:B, 6bco:D, 6bco:A, 6bco:C, 6bcq:D, 6bcq:A, 6bcq:C
19 7f0y:A 141 63 0.0373 0.1348 0.3016 4.1 7f0y:B, 7f10:B, 7f11:B
20 8qby:G 666 81 0.0549 0.0420 0.3457 4.2
21 3x2x:A 227 59 0.0333 0.0749 0.2881 5.1 3x2x:B, 3x30:A
22 6v4x:H 499 58 0.0373 0.0381 0.3276 5.2 6m8q:A, 6m8q:B
23 3csk:A 710 56 0.0333 0.0239 0.3036 6.6
24 7u2s:A 248 47 0.0353 0.0726 0.3830 7.0 7u2s:B
25 6q55:A 461 57 0.0392 0.0434 0.3509 9.5 6q5a:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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